scAtria | Intestine_37468586 · PCF / CODEX / PhenoCycler Fusion

Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-50 of 66

Domains Interaction Topology Download sample CSV

Domains

Neighborhood-domain samples

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Sample	Organ	Cells	Graph	Tiers	Open	Downloads
B004_Ascending Intestine_37468586__PCF_CODEX__B004_Ascending	Large intestine	21,232	NA	T1T2T3	View	NA
B004_Descending Intestine_37468586__PCF_CODEX__B004_Descending	Large intestine	30,547	NA	T1T2T3	View	NA
B004_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B004_Descending - Sigmoid	Large intestine	25,063	NA	T1T2T3	View	NA
B004_Duodenum Intestine_37468586__PCF_CODEX__B004_Duodenum	Small intestine	44,170	NA	T1T2T3	View	NA
B004_Ileum Intestine_37468586__PCF_CODEX__B004_Ileum	Small intestine	26,494	NA	T1T2T3	View	NA
B004_Mid-jejunum Intestine_37468586__PCF_CODEX__B004_Mid-jejunum	Small intestine	36,921	NA	T1T2T3	View	NA
B004_Proximal Jejunum Intestine_37468586__PCF_CODEX__B004_Proximal Jejunum	Small intestine	30,067	NA	T1T2T3	View	NA
B004_Transverse Intestine_37468586__PCF_CODEX__B004_Transverse	Large intestine	33,793	NA	T1T2T3	View	NA
B005_Ascending Intestine_37468586__PCF_CODEX__B005_Ascending	Large intestine	17,312	NA	T1T2T3	View	NA
B005_Descending Intestine_37468586__PCF_CODEX__B005_Descending	Large intestine	51,294	NA	T1T2T3	View	NA
B005_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B005_Descending - Sigmoid	Large intestine	14,230	NA	T1T2T3	View	NA
B005_Duodenum Intestine_37468586__PCF_CODEX__B005_Duodenum	Small intestine	23,558	NA	T1T2T3	View	NA
B005_Ileum Intestine_37468586__PCF_CODEX__B005_Ileum	Small intestine	17,670	NA	T1T2T3	View	NA
B005_Mid-jejunum Intestine_37468586__PCF_CODEX__B005_Mid-jejunum	Small intestine	86,102	NA	T1T2T3	View	NA
B005_Proximal Jejunum Intestine_37468586__PCF_CODEX__B005_Proximal Jejunum	Small intestine	38,321	NA	T1T2T3	View	NA
B005_Transverse Intestine_37468586__PCF_CODEX__B005_Transverse	Large intestine	33,281	NA	T1T2T3	View	NA
B006_Ascending Intestine_37468586__PCF_CODEX__B006_Ascending	Large intestine	38,371	NA	T1T2T3	View	NA
B006_Descending Intestine_37468586__PCF_CODEX__B006_Descending	Large intestine	20,379	NA	T1T2T3	View	NA
B006_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B006_Descending - Sigmoid	Large intestine	24,585	NA	T1T2T3	View	NA
B006_Duodenum Intestine_37468586__PCF_CODEX__B006_Duodenum	Small intestine	56,310	NA	T1T2T3	View	NA
B006_Ileum Intestine_37468586__PCF_CODEX__B006_Ileum	Small intestine	89,907	NA	T1T2T3	View	NA
B006_Mid-jejunum Intestine_37468586__PCF_CODEX__B006_Mid-jejunum	Small intestine	35,371	NA	T1T2T3	View	NA
B006_Proximal Jejunum Intestine_37468586__PCF_CODEX__B006_Proximal Jejunum	Small intestine	41,063	NA	T1T2T3	View	NA
B006_Transverse Intestine_37468586__PCF_CODEX__B006_Transverse	Large intestine	31,283	NA	T1T2T3	View	NA
B008_Duodenum Intestine_37468586__PCF_CODEX__B008_Duodenum	Small intestine	78,213	NA	T1T2T3	View	NA
B008_Ileum Intestine_37468586__PCF_CODEX__B008_Ileum	Small intestine	37,200	NA	T1T2T3	View	NA
B008_Left Intestine_37468586__PCF_CODEX__B008_Left	Large intestine	37,213	NA	T1T2T3	View	NA
B008_Mid jejunum Intestine_37468586__PCF_CODEX__B008_Mid jejunum	Small intestine	50,954	NA	T1T2T3	View	NA
B008_Proximal jejunum Intestine_37468586__PCF_CODEX__B008_Proximal jejunum	Small intestine	37,304	NA	T1T2T3	View	NA
B008_Proximal jejunum_extra Intestine_37468586__PCF_CODEX__B008_Proximal jejunum_extra	Small intestine	34,850	NA	T1T2T3	View	NA
B008_Right Intestine_37468586__PCF_CODEX__B008_Right	Large intestine	5,829	Ready	T1 T2 T3	View	Manifest Domain summary
B008_Sigmoid Intestine_37468586__PCF_CODEX__B008_Sigmoid	Small intestine	43,783	NA	T1T2T3	View	NA
B008_Trans Intestine_37468586__PCF_CODEX__B008_Trans	Large intestine	22,279	NA	T1T2T3	View	NA
B009_Duodenum Intestine_37468586__PCF_CODEX__B009_Duodenum	Small intestine	43,092	NA	T1T2T3	View	NA
B009_Ileum Intestine_37468586__PCF_CODEX__B009_Ileum	Small intestine	88,586	NA	T1T2T3	View	NA
B009_Left Intestine_37468586__PCF_CODEX__B009_Left	Large intestine	77,354	NA	T1T2T3	View	NA
B009_Mid jejunum Intestine_37468586__PCF_CODEX__B009_Mid jejunum	Small intestine	88,436	NA	T1T2T3	View	NA
B009_Mid jejunum_extra Intestine_37468586__PCF_CODEX__B009_Mid jejunum_extra	Small intestine	56,182	NA	T1T2T3	View	NA
B009_Proximal jejunum Intestine_37468586__PCF_CODEX__B009_Proximal jejunum	Small intestine	48,517	NA	T1T2T3	View	NA
B009_Right Intestine_37468586__PCF_CODEX__B009_Right	Large intestine	58,349	NA	T1T2T3	View	NA
B009_Sigmoid Intestine_37468586__PCF_CODEX__B009_Sigmoid	Small intestine	40,551	NA	T1T2T3	View	NA
B009_Trans Intestine_37468586__PCF_CODEX__B009_Trans	Large intestine	34,642	NA	T1T2T3	View	NA
B010_Duodenum Intestine_37468586__PCF_CODEX__B010_Duodenum	Small intestine	34,133	NA	T1T2T3	View	NA
B010_Ileum Intestine_37468586__PCF_CODEX__B010_Ileum	Small intestine	39,839	NA	T1T2T3	View	NA
B010_Left Intestine_37468586__PCF_CODEX__B010_Left	Large intestine	19,612	NA	T1T2T3	View	NA
B010_Mid jejunum Intestine_37468586__PCF_CODEX__B010_Mid jejunum	Small intestine	31,583	NA	T1T2T3	View	NA
B010_Proximal jejunum Intestine_37468586__PCF_CODEX__B010_Proximal jejunum	Small intestine	54,111	NA	T1T2T3	View	NA
B010_Right Intestine_37468586__PCF_CODEX__B010_Right	Large intestine	22,961	NA	T1T2T3	View	NA
B010_Sigmoid Intestine_37468586__PCF_CODEX__B010_Sigmoid	Small intestine	24,158	NA	T1T2T3	View	NA
B010_Trans Intestine_37468586__PCF_CODEX__B010_Trans	Large intestine	14,924	NA	T1T2T3	View	NA

Interaction Propensity

Cell-type contact samples

1 ready Open page

Sample	Organ	Cells	Graph	Tiers	Open	Downloads
B004_Ascending Intestine_37468586__PCF_CODEX__B004_Ascending	Large intestine	21,232	NA	T1T2T3	View	NA
B004_Descending Intestine_37468586__PCF_CODEX__B004_Descending	Large intestine	30,547	NA	T1T2T3	View	NA
B004_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B004_Descending - Sigmoid	Large intestine	25,063	NA	T1T2T3	View	NA
B004_Duodenum Intestine_37468586__PCF_CODEX__B004_Duodenum	Small intestine	44,170	NA	T1T2T3	View	NA
B004_Ileum Intestine_37468586__PCF_CODEX__B004_Ileum	Small intestine	26,494	NA	T1T2T3	View	NA
B004_Mid-jejunum Intestine_37468586__PCF_CODEX__B004_Mid-jejunum	Small intestine	36,921	NA	T1T2T3	View	NA
B004_Proximal Jejunum Intestine_37468586__PCF_CODEX__B004_Proximal Jejunum	Small intestine	30,067	NA	T1T2T3	View	NA
B004_Transverse Intestine_37468586__PCF_CODEX__B004_Transverse	Large intestine	33,793	NA	T1T2T3	View	NA
B005_Ascending Intestine_37468586__PCF_CODEX__B005_Ascending	Large intestine	17,312	NA	T1T2T3	View	NA
B005_Descending Intestine_37468586__PCF_CODEX__B005_Descending	Large intestine	51,294	NA	T1T2T3	View	NA
B005_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B005_Descending - Sigmoid	Large intestine	14,230	NA	T1T2T3	View	NA
B005_Duodenum Intestine_37468586__PCF_CODEX__B005_Duodenum	Small intestine	23,558	NA	T1T2T3	View	NA
B005_Ileum Intestine_37468586__PCF_CODEX__B005_Ileum	Small intestine	17,670	NA	T1T2T3	View	NA
B005_Mid-jejunum Intestine_37468586__PCF_CODEX__B005_Mid-jejunum	Small intestine	86,102	NA	T1T2T3	View	NA
B005_Proximal Jejunum Intestine_37468586__PCF_CODEX__B005_Proximal Jejunum	Small intestine	38,321	NA	T1T2T3	View	NA
B005_Transverse Intestine_37468586__PCF_CODEX__B005_Transverse	Large intestine	33,281	NA	T1T2T3	View	NA
B006_Ascending Intestine_37468586__PCF_CODEX__B006_Ascending	Large intestine	38,371	NA	T1T2T3	View	NA
B006_Descending Intestine_37468586__PCF_CODEX__B006_Descending	Large intestine	20,379	NA	T1T2T3	View	NA
B006_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B006_Descending - Sigmoid	Large intestine	24,585	NA	T1T2T3	View	NA
B006_Duodenum Intestine_37468586__PCF_CODEX__B006_Duodenum	Small intestine	56,310	NA	T1T2T3	View	NA
B006_Ileum Intestine_37468586__PCF_CODEX__B006_Ileum	Small intestine	89,907	NA	T1T2T3	View	NA
B006_Mid-jejunum Intestine_37468586__PCF_CODEX__B006_Mid-jejunum	Small intestine	35,371	NA	T1T2T3	View	NA
B006_Proximal Jejunum Intestine_37468586__PCF_CODEX__B006_Proximal Jejunum	Small intestine	41,063	NA	T1T2T3	View	NA
B006_Transverse Intestine_37468586__PCF_CODEX__B006_Transverse	Large intestine	31,283	NA	T1T2T3	View	NA
B008_Duodenum Intestine_37468586__PCF_CODEX__B008_Duodenum	Small intestine	78,213	NA	T1T2T3	View	NA
B008_Ileum Intestine_37468586__PCF_CODEX__B008_Ileum	Small intestine	37,200	NA	T1T2T3	View	NA
B008_Left Intestine_37468586__PCF_CODEX__B008_Left	Large intestine	37,213	NA	T1T2T3	View	NA
B008_Mid jejunum Intestine_37468586__PCF_CODEX__B008_Mid jejunum	Small intestine	50,954	NA	T1T2T3	View	NA
B008_Proximal jejunum Intestine_37468586__PCF_CODEX__B008_Proximal jejunum	Small intestine	37,304	NA	T1T2T3	View	NA
B008_Proximal jejunum_extra Intestine_37468586__PCF_CODEX__B008_Proximal jejunum_extra	Small intestine	34,850	NA	T1T2T3	View	NA
B008_Right Intestine_37468586__PCF_CODEX__B008_Right	Large intestine	5,829	Ready	T1 T2 T3	View	Manifest Pair summary
B008_Sigmoid Intestine_37468586__PCF_CODEX__B008_Sigmoid	Small intestine	43,783	NA	T1T2T3	View	NA
B008_Trans Intestine_37468586__PCF_CODEX__B008_Trans	Large intestine	22,279	NA	T1T2T3	View	NA
B009_Duodenum Intestine_37468586__PCF_CODEX__B009_Duodenum	Small intestine	43,092	NA	T1T2T3	View	NA
B009_Ileum Intestine_37468586__PCF_CODEX__B009_Ileum	Small intestine	88,586	NA	T1T2T3	View	NA
B009_Left Intestine_37468586__PCF_CODEX__B009_Left	Large intestine	77,354	NA	T1T2T3	View	NA
B009_Mid jejunum Intestine_37468586__PCF_CODEX__B009_Mid jejunum	Small intestine	88,436	NA	T1T2T3	View	NA
B009_Mid jejunum_extra Intestine_37468586__PCF_CODEX__B009_Mid jejunum_extra	Small intestine	56,182	NA	T1T2T3	View	NA
B009_Proximal jejunum Intestine_37468586__PCF_CODEX__B009_Proximal jejunum	Small intestine	48,517	NA	T1T2T3	View	NA
B009_Right Intestine_37468586__PCF_CODEX__B009_Right	Large intestine	58,349	NA	T1T2T3	View	NA
B009_Sigmoid Intestine_37468586__PCF_CODEX__B009_Sigmoid	Small intestine	40,551	NA	T1T2T3	View	NA
B009_Trans Intestine_37468586__PCF_CODEX__B009_Trans	Large intestine	34,642	NA	T1T2T3	View	NA
B010_Duodenum Intestine_37468586__PCF_CODEX__B010_Duodenum	Small intestine	34,133	NA	T1T2T3	View	NA
B010_Ileum Intestine_37468586__PCF_CODEX__B010_Ileum	Small intestine	39,839	NA	T1T2T3	View	NA
B010_Left Intestine_37468586__PCF_CODEX__B010_Left	Large intestine	19,612	NA	T1T2T3	View	NA
B010_Mid jejunum Intestine_37468586__PCF_CODEX__B010_Mid jejunum	Small intestine	31,583	NA	T1T2T3	View	NA
B010_Proximal jejunum Intestine_37468586__PCF_CODEX__B010_Proximal jejunum	Small intestine	54,111	NA	T1T2T3	View	NA
B010_Right Intestine_37468586__PCF_CODEX__B010_Right	Large intestine	22,961	NA	T1T2T3	View	NA
B010_Sigmoid Intestine_37468586__PCF_CODEX__B010_Sigmoid	Small intestine	24,158	NA	T1T2T3	View	NA
B010_Trans Intestine_37468586__PCF_CODEX__B010_Trans	Large intestine	14,924	NA	T1T2T3	View	NA

Network Topology

Graph-topology samples

1 ready Open page

Sample	Organ	Cells	Graph	Tiers	Open	Downloads
B004_Ascending Intestine_37468586__PCF_CODEX__B004_Ascending	Large intestine	21,232	NA	T1T2T3	View	NA
B004_Descending Intestine_37468586__PCF_CODEX__B004_Descending	Large intestine	30,547	NA	T1T2T3	View	NA
B004_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B004_Descending - Sigmoid	Large intestine	25,063	NA	T1T2T3	View	NA
B004_Duodenum Intestine_37468586__PCF_CODEX__B004_Duodenum	Small intestine	44,170	NA	T1T2T3	View	NA
B004_Ileum Intestine_37468586__PCF_CODEX__B004_Ileum	Small intestine	26,494	NA	T1T2T3	View	NA
B004_Mid-jejunum Intestine_37468586__PCF_CODEX__B004_Mid-jejunum	Small intestine	36,921	NA	T1T2T3	View	NA
B004_Proximal Jejunum Intestine_37468586__PCF_CODEX__B004_Proximal Jejunum	Small intestine	30,067	NA	T1T2T3	View	NA
B004_Transverse Intestine_37468586__PCF_CODEX__B004_Transverse	Large intestine	33,793	NA	T1T2T3	View	NA
B005_Ascending Intestine_37468586__PCF_CODEX__B005_Ascending	Large intestine	17,312	NA	T1T2T3	View	NA
B005_Descending Intestine_37468586__PCF_CODEX__B005_Descending	Large intestine	51,294	NA	T1T2T3	View	NA
B005_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B005_Descending - Sigmoid	Large intestine	14,230	NA	T1T2T3	View	NA
B005_Duodenum Intestine_37468586__PCF_CODEX__B005_Duodenum	Small intestine	23,558	NA	T1T2T3	View	NA
B005_Ileum Intestine_37468586__PCF_CODEX__B005_Ileum	Small intestine	17,670	NA	T1T2T3	View	NA
B005_Mid-jejunum Intestine_37468586__PCF_CODEX__B005_Mid-jejunum	Small intestine	86,102	NA	T1T2T3	View	NA
B005_Proximal Jejunum Intestine_37468586__PCF_CODEX__B005_Proximal Jejunum	Small intestine	38,321	NA	T1T2T3	View	NA
B005_Transverse Intestine_37468586__PCF_CODEX__B005_Transverse	Large intestine	33,281	NA	T1T2T3	View	NA
B006_Ascending Intestine_37468586__PCF_CODEX__B006_Ascending	Large intestine	38,371	NA	T1T2T3	View	NA
B006_Descending Intestine_37468586__PCF_CODEX__B006_Descending	Large intestine	20,379	NA	T1T2T3	View	NA
B006_Descending - Sigmoid Intestine_37468586__PCF_CODEX__B006_Descending - Sigmoid	Large intestine	24,585	NA	T1T2T3	View	NA
B006_Duodenum Intestine_37468586__PCF_CODEX__B006_Duodenum	Small intestine	56,310	NA	T1T2T3	View	NA
B006_Ileum Intestine_37468586__PCF_CODEX__B006_Ileum	Small intestine	89,907	NA	T1T2T3	View	NA
B006_Mid-jejunum Intestine_37468586__PCF_CODEX__B006_Mid-jejunum	Small intestine	35,371	NA	T1T2T3	View	NA
B006_Proximal Jejunum Intestine_37468586__PCF_CODEX__B006_Proximal Jejunum	Small intestine	41,063	NA	T1T2T3	View	NA
B006_Transverse Intestine_37468586__PCF_CODEX__B006_Transverse	Large intestine	31,283	NA	T1T2T3	View	NA
B008_Duodenum Intestine_37468586__PCF_CODEX__B008_Duodenum	Small intestine	78,213	NA	T1T2T3	View	NA
B008_Ileum Intestine_37468586__PCF_CODEX__B008_Ileum	Small intestine	37,200	NA	T1T2T3	View	NA
B008_Left Intestine_37468586__PCF_CODEX__B008_Left	Large intestine	37,213	NA	T1T2T3	View	NA
B008_Mid jejunum Intestine_37468586__PCF_CODEX__B008_Mid jejunum	Small intestine	50,954	NA	T1T2T3	View	NA
B008_Proximal jejunum Intestine_37468586__PCF_CODEX__B008_Proximal jejunum	Small intestine	37,304	NA	T1T2T3	View	NA
B008_Proximal jejunum_extra Intestine_37468586__PCF_CODEX__B008_Proximal jejunum_extra	Small intestine	34,850	NA	T1T2T3	View	NA
B008_Right Intestine_37468586__PCF_CODEX__B008_Right	Large intestine	5,829	Ready	T1 T2 T3	View	Manifest Topology summary
B008_Sigmoid Intestine_37468586__PCF_CODEX__B008_Sigmoid	Small intestine	43,783	NA	T1T2T3	View	NA
B008_Trans Intestine_37468586__PCF_CODEX__B008_Trans	Large intestine	22,279	NA	T1T2T3	View	NA
B009_Duodenum Intestine_37468586__PCF_CODEX__B009_Duodenum	Small intestine	43,092	NA	T1T2T3	View	NA
B009_Ileum Intestine_37468586__PCF_CODEX__B009_Ileum	Small intestine	88,586	NA	T1T2T3	View	NA
B009_Left Intestine_37468586__PCF_CODEX__B009_Left	Large intestine	77,354	NA	T1T2T3	View	NA
B009_Mid jejunum Intestine_37468586__PCF_CODEX__B009_Mid jejunum	Small intestine	88,436	NA	T1T2T3	View	NA
B009_Mid jejunum_extra Intestine_37468586__PCF_CODEX__B009_Mid jejunum_extra	Small intestine	56,182	NA	T1T2T3	View	NA
B009_Proximal jejunum Intestine_37468586__PCF_CODEX__B009_Proximal jejunum	Small intestine	48,517	NA	T1T2T3	View	NA
B009_Right Intestine_37468586__PCF_CODEX__B009_Right	Large intestine	58,349	NA	T1T2T3	View	NA
B009_Sigmoid Intestine_37468586__PCF_CODEX__B009_Sigmoid	Small intestine	40,551	NA	T1T2T3	View	NA
B009_Trans Intestine_37468586__PCF_CODEX__B009_Trans	Large intestine	34,642	NA	T1T2T3	View	NA
B010_Duodenum Intestine_37468586__PCF_CODEX__B010_Duodenum	Small intestine	34,133	NA	T1T2T3	View	NA
B010_Ileum Intestine_37468586__PCF_CODEX__B010_Ileum	Small intestine	39,839	NA	T1T2T3	View	NA
B010_Left Intestine_37468586__PCF_CODEX__B010_Left	Large intestine	19,612	NA	T1T2T3	View	NA
B010_Mid jejunum Intestine_37468586__PCF_CODEX__B010_Mid jejunum	Small intestine	31,583	NA	T1T2T3	View	NA
B010_Proximal jejunum Intestine_37468586__PCF_CODEX__B010_Proximal jejunum	Small intestine	54,111	NA	T1T2T3	View	NA
B010_Right Intestine_37468586__PCF_CODEX__B010_Right	Large intestine	22,961	NA	T1T2T3	View	NA
B010_Sigmoid Intestine_37468586__PCF_CODEX__B010_Sigmoid	Small intestine	24,158	NA	T1T2T3	View	NA
B010_Trans Intestine_37468586__PCF_CODEX__B010_Trans	Large intestine	14,924	NA	T1T2T3	View	NA