scAtria single-cell spatial atlas resource

Intestine_39843748 · Xenium

Intestine_39843748 · Intestine_39843748__Xenium

Xenium Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-16 of 16
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

0 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Intestine_39843748__Xenium__GSE280895_human__human_05_r1 Small intestine 59,128 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_05_r2 Small intestine 61,896 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r1 Small intestine 44,654 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r2 Small intestine 48,868 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_2 Small intestine 239,393 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_3 Small intestine 157,481 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI Small intestine 251,218 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2 Small intestine 258,269 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI Small intestine 322,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2 Small intestine 274,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl Small intestine 272,699 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2 Small intestine 198,887 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI Small intestine 255,440 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2 Small intestine 241,781 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1 Small intestine 242,156 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2 Small intestine 191,024 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

0 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Intestine_39843748__Xenium__GSE280895_human__human_05_r1 Small intestine 59,128 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_05_r2 Small intestine 61,896 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r1 Small intestine 44,654 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r2 Small intestine 48,868 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_2 Small intestine 239,393 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_3 Small intestine 157,481 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI Small intestine 251,218 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2 Small intestine 258,269 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI Small intestine 322,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2 Small intestine 274,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl Small intestine 272,699 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2 Small intestine 198,887 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI Small intestine 255,440 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2 Small intestine 241,781 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1 Small intestine 242,156 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2 Small intestine 191,024 NA T1T2T3 View NA
Network Topology

Graph-topology samples

0 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Intestine_39843748__Xenium__GSE280895_human__human_05_r1 Small intestine 59,128 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_05_r2 Small intestine 61,896 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r1 Small intestine 44,654 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_human__human_09_r2 Small intestine 48,868 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_2 Small intestine 239,393 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_perturb__SI_3 Small intestine 157,481 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI Small intestine 251,218 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day30_SI_r2 Small intestine 258,269 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI Small intestine 322,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day6_SI_r2 Small intestine 274,464 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_Ctrl Small intestine 272,699 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day8_SI_r2 Small intestine 198,887 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI Small intestine 255,440 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_timecourse__day90_SI_r2 Small intestine 241,781 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI1 Small intestine 242,156 NA T1T2T3 View NA
Intestine_39843748__Xenium__GSE280895_uninfected__segmentation_SI2 Small intestine 191,024 NA T1T2T3 View NA