scAtria single-cell spatial atlas resource

MERFISH 500-plex Vizgen showcase

MERFISH 500-plex Vizgen showcase · MERFISH_500_Vizgen__MERFISH

MERFISH / MERSCOPE Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

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Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

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Sample Organ Cells Graph Tiers Open Downloads
MERFISH_500_Vizgen__MERFISH__MERFISHBreastCancerP1 Breast 713,121 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP1 Large intestine 677,451 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP2 Large intestine 817,588 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 Liver 568,355 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 Liver 598,141 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP1 Lung 353,762 Ready T1T2T3 View
Manifest Domain summary
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP2 Lung 836,739 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP1 Skin 468,138 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP2 Skin 207,869 Ready T1T2T3 View
Manifest Domain summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP1 Ovary 358,485 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice1 Ovary 254,347 Ready T1T2T3 View
Manifest Domain summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice2 Ovary 71,381 Ready T1T2T3 View
Manifest Domain summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice3 Ovary 212,425 Ready T1T2T3 View
Manifest Domain summary
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP1 Prostate 721,668 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP2 Prostate 993,825 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP1 Uterus/Cervix 843,285 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_RACostain Uterus/Cervix 741,749 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_ROCostain Uterus/Cervix 758,506 NA T1T2T3 View NA
Interaction Propensity

Cell-type contact samples

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Sample Organ Cells Graph Tiers Open Downloads
MERFISH_500_Vizgen__MERFISH__MERFISHBreastCancerP1 Breast 713,121 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP1 Large intestine 677,451 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP2 Large intestine 817,588 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 Liver 568,355 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 Liver 598,141 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP1 Lung 353,762 Ready T1T2T3 View
Manifest Pair summary
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP2 Lung 836,739 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP1 Skin 468,138 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP2 Skin 207,869 Ready T1T2T3 View
Manifest Pair summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP1 Ovary 358,485 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice1 Ovary 254,347 Ready T1T2T3 View
Manifest Pair summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice2 Ovary 71,381 Ready T1T2T3 View
Manifest Pair summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice3 Ovary 212,425 Ready T1T2T3 View
Manifest Pair summary
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP1 Prostate 721,668 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP2 Prostate 993,825 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP1 Uterus/Cervix 843,285 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_RACostain Uterus/Cervix 741,749 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_ROCostain Uterus/Cervix 758,506 NA T1T2T3 View NA
Network Topology

Graph-topology samples

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Sample Organ Cells Graph Tiers Open Downloads
MERFISH_500_Vizgen__MERFISH__MERFISHBreastCancerP1 Breast 713,121 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP1 Large intestine 677,451 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHColonCancerP2 Large intestine 817,588 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP1 Liver 568,355 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLiverCancerP2 Liver 598,141 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP1 Lung 353,762 Ready T1T2T3 View
Manifest Topology summary
MERFISH_500_Vizgen__MERFISH__MERFISHLungCancerP2 Lung 836,739 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP1 Skin 468,138 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHMelanomaP2 Skin 207,869 Ready T1T2T3 View
Manifest Topology summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP1 Ovary 358,485 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice1 Ovary 254,347 Ready T1T2T3 View
Manifest Topology summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice2 Ovary 71,381 Ready T1T2T3 View
Manifest Topology summary
MERFISH_500_Vizgen__MERFISH__MERFISHOvarianCancerP2Slice3 Ovary 212,425 Ready T1T2T3 View
Manifest Topology summary
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP1 Prostate 721,668 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHProstateCancerP2 Prostate 993,825 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP1 Uterus/Cervix 843,285 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_RACostain Uterus/Cervix 741,749 NA T1T2T3 View NA
MERFISH_500_Vizgen__MERFISH__MERFISHUterineCancerP2_ROCostain Uterus/Cervix 758,506 NA T1T2T3 View NA