scAtria single-cell spatial atlas resource

Melanoma_35363543 · IMC / Imaging Mass Cytometry

Melanoma_35363543 · Melanoma_35363543__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered
Features

Cell-ontology markers

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Features tested
53
Label tier
cell_type_tier_3
Marker output
36 rows
QC
Caveat
Seurat FindAllMarkers, one curated cell-ontology label versus all others. Effect size is logFC; significance is BH FDR.
Cell ontology Feature logFC FDR p value
B cell cd8a 177.550 0.00e+0 0.00e+0
B cell cd20 38.537 0.00e+0 0.00e+0
B cell ki67 5.198 0.00e+0 0.00e+0
B cell icos 1.674 0.00e+0 0.00e+0
B cell cd40 1.385 0.00e+0 0.00e+0
B cell cd45 0.994 0.00e+0 0.00e+0
Other cd14 137.989 0.00e+0 0.00e+0
Other cd45 0.806 0.00e+0 0.00e+0
Other cd47 117.555 7.75e-241 4.65e-241
Other tim3 4.829 9.97e-200 7.98e-200
Other cd45ra Inf 1.09e-78 1.09e-78
Tumor/Malignant cell s100 112.594 0.00e+0 0.00e+0
Tumor/Malignant cell sox10 38.992 0.00e+0 0.00e+0
Macrophage cd68 59.871 0.00e+0 0.00e+0
Macrophage collageni 10.816 0.00e+0 0.00e+0
Macrophage ccr7 7.690 0.00e+0 0.00e+0
Macrophage cd40 2.673 0.00e+0 0.00e+0
Macrophage cd16 3.626 7.84e-3 7.84e-3
Endothelial cell cd31 17.466 0.00e+0 0.00e+0
Endothelial cell vista 3.410 0.00e+0 0.00e+0
Endothelial cell cd29 3.059 0.00e+0 0.00e+0
Endothelial cell icos 2.247 0.00e+0 0.00e+0
Endothelial cell ccr7 0.609 0.00e+0 0.00e+0
Endothelial cell cd56 12.428 1.43e-202 1.43e-202
T cell cd45ro 9.240 0.00e+0 0.00e+0
T cell pdl1 6.348 0.00e+0 0.00e+0
T cell cd3 5.479 0.00e+0 0.00e+0
T cell granzymeb 5.301 0.00e+0 0.00e+0
T cell cd4 4.907 0.00e+0 0.00e+0
T cell foxp3 4.315 0.00e+0 0.00e+0
T cell icos 4.218 0.00e+0 0.00e+0
T cell cd45 3.806 0.00e+0 0.00e+0
T cell cd40 2.863 0.00e+0 0.00e+0
T cell cd16 2.475 0.00e+0 0.00e+0
T cell vista 2.263 0.00e+0 0.00e+0
T cell ki67 0.925 1.31e-110 1.31e-110