scAtria single-cell spatial atlas resource

Melanoma_40148341 · CosMx SMI / NanoString SMI

Melanoma_40148341 · Melanoma_40148341__CosMx_SMI

CosMx SMI / NanoString SMI Spatial transcriptomics Curated Tiered
Spatial analyses

Dataset sample manifest

Dataset-specific sample status for each public spatial analysis page.

1-25 of 25
Domains Interaction Topology Download sample CSV
Domains

Neighborhood-domain samples

24 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Melanoma_40148341__CosMx_SMI__CPID_20477 Skin 2,185 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_28824 Skin 1,922 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_29873 Skin 2,798 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31767 Skin 3,340 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31769 Skin 2,516 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31770 Skin 2,611 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31786 Skin 2,143 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31787 Skin 2,374 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31788 Skin 2,134 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31790 Skin 6,040 NA T1T2T3 View NA
Melanoma_40148341__CosMx_SMI__CPID_31791 Skin 1,463 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31792 Skin 2,244 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31793 Skin 2,249 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31794 Skin 1,065 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31795 Skin 2,515 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31796 Skin 1,731 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31797 Skin 3,294 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31808 Skin 2,010 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31810 Skin 2,115 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31811 Skin 2,402 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31812 Skin 1,047 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31814 Skin 951 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31815 Skin 2,588 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31816 Skin 1,527 Ready T1T2T3 View
Manifest Domain summary
Melanoma_40148341__CosMx_SMI__CPID_31817 Skin 1,497 Ready T1T2T3 View
Manifest Domain summary
Interaction Propensity

Cell-type contact samples

24 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Melanoma_40148341__CosMx_SMI__CPID_20477 Skin 2,185 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_28824 Skin 1,922 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_29873 Skin 2,798 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31767 Skin 3,340 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31769 Skin 2,516 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31770 Skin 2,611 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31786 Skin 2,143 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31787 Skin 2,374 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31788 Skin 2,134 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31790 Skin 6,040 NA T1T2T3 View NA
Melanoma_40148341__CosMx_SMI__CPID_31791 Skin 1,463 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31792 Skin 2,244 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31793 Skin 2,249 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31794 Skin 1,065 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31795 Skin 2,515 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31796 Skin 1,731 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31797 Skin 3,294 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31808 Skin 2,010 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31810 Skin 2,115 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31811 Skin 2,402 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31812 Skin 1,047 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31814 Skin 951 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31815 Skin 2,588 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31816 Skin 1,527 Ready T1T2T3 View
Manifest Pair summary
Melanoma_40148341__CosMx_SMI__CPID_31817 Skin 1,497 Ready T1T2T3 View
Manifest Pair summary
Network Topology

Graph-topology samples

24 ready Open page
Sample Organ Cells Graph Tiers Open Downloads
Melanoma_40148341__CosMx_SMI__CPID_20477 Skin 2,185 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_28824 Skin 1,922 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_29873 Skin 2,798 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31767 Skin 3,340 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31769 Skin 2,516 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31770 Skin 2,611 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31786 Skin 2,143 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31787 Skin 2,374 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31788 Skin 2,134 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31790 Skin 6,040 NA T1T2T3 View NA
Melanoma_40148341__CosMx_SMI__CPID_31791 Skin 1,463 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31792 Skin 2,244 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31793 Skin 2,249 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31794 Skin 1,065 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31795 Skin 2,515 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31796 Skin 1,731 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31797 Skin 3,294 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31808 Skin 2,010 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31810 Skin 2,115 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31811 Skin 2,402 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31812 Skin 1,047 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31814 Skin 951 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31815 Skin 2,588 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31816 Skin 1,527 Ready T1T2T3 View
Manifest Topology summary
Melanoma_40148341__CosMx_SMI__CPID_31817 Skin 1,497 Ready T1T2T3 View
Manifest Topology summary