Features
Cell-ontology markers
Features tested
28
Label tier
cell_type_tier_3
Marker output
36 rows
QC
Caveat
Seurat FindAllMarkers, one curated cell-ontology label versus all others. Effect size is logFC; significance is BH FDR.
| Cell ontology | Feature | logFC | FDR | p value |
|---|---|---|---|---|
| Immune cell, unspecified | pcna | 6.110 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | foxp3 | 4.600 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | pdgfr | 4.031 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | cd68 | 3.955 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | patr | 3.677 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | ccnd1 | 3.569 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | p75 | 3.288 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | vimentin | 3.098 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | ccna2 | 2.707 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | phh3 | 2.554 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | ph2ax | 2.423 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | pegfr | 2.199 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | axl | 2.029 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | mitf | 1.671 | 0.00e+0 | 0.00e+0 |
| Immune cell, unspecified | ki67 | 1.515 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ecad | 4.882 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ps6 | 4.461 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | cd8 | 4.456 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | axl | 3.666 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ki67 | 3.658 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | mitf | 3.374 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | pegfr | 3.334 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ph2ax | 3.023 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ccna2 | 2.947 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | s100 | 2.639 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | phh3 | 2.613 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | vimentin | 2.434 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | p75 | 2.373 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | pdgfr | 1.750 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | ccnd1 | 1.660 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | patr | 1.537 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | foxp3 | 1.510 | 0.00e+0 | 0.00e+0 |
| Stromal cell, unspecified | cd68 | 1.185 | 0.00e+0 | 0.00e+0 |
| Endothelial cell | perk | 0.856 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | perk | 0.603 | 0.00e+0 | 0.00e+0 |
| Tumor/Malignant cell | s100 | 0.463 | 0.00e+0 | 0.00e+0 |