scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B3,7 Lung Primary cancer 2,763 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,8 Lung Primary cancer 4,496 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,9 Lung Primary cancer 3,044 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B4,1 Lung Primary cancer 3,046 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,10 Lung Primary cancer 1,320 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,11 Lung Primary cancer 2,898 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B4,12 Lung Primary cancer 4,536 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B4,13 Lung Primary cancer 2,834 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,14 Lung Primary cancer 3,599 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,15 Lung Primary cancer 3,084 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,16 Lung Primary cancer 4,218 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,17 Lung Primary cancer 3,092 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,2 Lung Primary cancer 2,911 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,3 Lung Primary cancer 3,892 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,4 Lung Primary cancer 2,855 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,5 Lung Primary cancer 3,190 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,6 Lung Primary cancer 3,026 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,7 Lung Primary cancer 2,360 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,8 Lung Primary cancer 5,430 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,9 Lung Primary cancer 3,378 0.10 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B3,7 Lung Primary cancer 2,763 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,8 Lung Primary cancer 4,496 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B3,9 Lung Primary cancer 3,044 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B4,1 Lung Primary cancer 3,046 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,10 Lung Primary cancer 1,320 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,11 Lung Primary cancer 2,898 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B4,12 Lung Primary cancer 4,536 0.02 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B4,13 Lung Primary cancer 2,834 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,14 Lung Primary cancer 3,599 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,15 Lung Primary cancer 3,084 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,16 Lung Primary cancer 4,218 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,17 Lung Primary cancer 3,092 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,2 Lung Primary cancer 2,911 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,3 Lung Primary cancer 3,892 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,4 Lung Primary cancer 2,855 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,5 Lung Primary cancer 3,190 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B4,6 Lung Primary cancer 3,026 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,7 Lung Primary cancer 2,360 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,8 Lung Primary cancer 5,430 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B4,9 Lung Primary cancer 3,378 0.10 0.19 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B3,7 Lung Primary cancer 2,763 0.26 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,8 Lung Primary cancer 4,496 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B3,9 Lung Primary cancer 3,044 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B4,1 Lung Primary cancer 3,046 0.35 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B4,10 Lung Primary cancer 1,320 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,11 Lung Primary cancer 2,898 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B4,12 Lung Primary cancer 4,536 0.02 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B4,13 Lung Primary cancer 2,834 0.45 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B4,14 Lung Primary cancer 3,599 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,15 Lung Primary cancer 3,084 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,16 Lung Primary cancer 4,218 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,17 Lung Primary cancer 3,092 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,2 Lung Primary cancer 2,911 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B4,3 Lung Primary cancer 3,892 0.29 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,4 Lung Primary cancer 2,855 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,5 Lung Primary cancer 3,190 0.38 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B4,6 Lung Primary cancer 3,026 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,7 Lung Primary cancer 2,360 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,8 Lung Primary cancer 5,430 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B4,9 Lung Primary cancer 3,378 0.10 0.15 Homogeneous Weakly segregated