scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C2,1 Lung Primary cancer 2,758 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,10 Lung Primary cancer 3,307 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,11 Lung Primary cancer 1,306 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C2,12 Lung Primary cancer 3,372 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,13 Lung Primary cancer 1,907 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,14 Lung Primary cancer 2,427 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,15 Lung Primary cancer 1,403 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,2 Lung Primary cancer 5,346 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,3 Lung Primary cancer 3,214 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,6 Lung Primary cancer 2,389 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,8 Lung Primary cancer 3,538 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,9 Lung Primary cancer 2,497 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,1 Lung Primary cancer 2,992 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,11 Lung Primary cancer 2,885 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,12 Lung Primary cancer 5,783 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,14 Lung Primary cancer 4,881 0.01 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,15 Lung Primary cancer 682 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,2 Lung Primary cancer 1,570 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,3 Lung Primary cancer 383 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,4 Lung Primary cancer 133 0.14 -0.02 Homogeneous Weakly mixed

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C2,1 Lung Primary cancer 2,758 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,10 Lung Primary cancer 3,307 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,11 Lung Primary cancer 1,306 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C2,12 Lung Primary cancer 3,372 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,13 Lung Primary cancer 1,907 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,14 Lung Primary cancer 2,427 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,15 Lung Primary cancer 1,403 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C2,2 Lung Primary cancer 5,346 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,3 Lung Primary cancer 3,214 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,6 Lung Primary cancer 2,389 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,8 Lung Primary cancer 3,538 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C2,9 Lung Primary cancer 2,497 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,1 Lung Primary cancer 2,992 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,11 Lung Primary cancer 2,885 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,12 Lung Primary cancer 5,783 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,14 Lung Primary cancer 4,881 0.01 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C3,15 Lung Primary cancer 682 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,2 Lung Primary cancer 1,570 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C3,3 Lung Primary cancer 383 0.20 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,4 Lung Primary cancer 133 0.14 -0.02 Homogeneous Weakly mixed

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C2,1 Lung Primary cancer 2,758 0.43 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C2,10 Lung Primary cancer 3,307 0.32 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,11 Lung Primary cancer 1,306 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C2,12 Lung Primary cancer 3,372 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C2,13 Lung Primary cancer 1,907 0.36 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C2,14 Lung Primary cancer 2,427 0.21 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,15 Lung Primary cancer 1,403 0.36 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C2,2 Lung Primary cancer 5,346 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,3 Lung Primary cancer 3,214 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,6 Lung Primary cancer 2,389 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,8 Lung Primary cancer 3,538 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C2,9 Lung Primary cancer 2,497 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,1 Lung Primary cancer 2,992 0.29 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,11 Lung Primary cancer 2,885 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,12 Lung Primary cancer 5,783 0.13 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C3,14 Lung Primary cancer 4,881 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C3,15 Lung Primary cancer 682 0.15 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C3,2 Lung Primary cancer 1,570 0.13 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C3,3 Lung Primary cancer 383 0.21 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,4 Lung Primary cancer 133 0.14 -0.02 Homogeneous Weakly mixed