scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C3,5 Lung Primary cancer 2,395 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,6 Lung Primary cancer 3,905 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,7 Lung Primary cancer 4,437 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,8 Lung Primary cancer 2,655 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C3,9 Lung Primary cancer 825 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,1 Lung Primary cancer 3,475 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,10 Lung Primary cancer 4,221 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,11 Lung Primary cancer 3,121 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,13 Lung Primary cancer 709 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,14 Lung Primary cancer 5,648 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,15 Lung Primary cancer 540 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,2 Lung Primary cancer 2,398 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,3 Lung Primary cancer 2,635 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,4 Lung Primary cancer 392 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,5 Lung Primary cancer 2,537 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,6 Lung Primary cancer 2,515 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,7 Lung Primary cancer 118 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,8 Lung Primary cancer 2,727 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C4,9 Lung Primary cancer 2,389 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,1 Lung Primary cancer 3,087 0.15 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C3,5 Lung Primary cancer 2,395 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,6 Lung Primary cancer 3,905 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,7 Lung Primary cancer 4,437 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C3,8 Lung Primary cancer 2,655 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C3,9 Lung Primary cancer 825 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,1 Lung Primary cancer 3,475 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,10 Lung Primary cancer 4,221 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,11 Lung Primary cancer 3,121 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,13 Lung Primary cancer 709 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,14 Lung Primary cancer 5,648 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,15 Lung Primary cancer 540 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,2 Lung Primary cancer 2,398 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C4,3 Lung Primary cancer 2,635 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,4 Lung Primary cancer 392 0.26 0.05 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,5 Lung Primary cancer 2,537 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,6 Lung Primary cancer 2,515 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,7 Lung Primary cancer 118 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,8 Lung Primary cancer 2,727 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C4,9 Lung Primary cancer 2,389 0.28 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,1 Lung Primary cancer 3,087 0.15 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C3,5 Lung Primary cancer 2,395 0.22 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,6 Lung Primary cancer 3,905 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,7 Lung Primary cancer 4,437 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C3,8 Lung Primary cancer 2,655 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C3,9 Lung Primary cancer 825 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,1 Lung Primary cancer 3,475 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,10 Lung Primary cancer 4,221 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C4,11 Lung Primary cancer 3,121 0.09 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C4,13 Lung Primary cancer 709 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C4,14 Lung Primary cancer 5,648 0.16 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,15 Lung Primary cancer 540 0.19 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,2 Lung Primary cancer 2,398 0.14 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C4,3 Lung Primary cancer 2,635 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C4,4 Lung Primary cancer 392 0.26 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,5 Lung Primary cancer 2,537 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,6 Lung Primary cancer 2,515 0.26 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,7 Lung Primary cancer 118 0.19 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C4,8 Lung Primary cancer 2,727 0.40 0.15 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C4,9 Lung Primary cancer 2,389 0.29 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,1 Lung Primary cancer 3,087 0.15 0.09 Weakly structured Weakly segregated