scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 Tumor/Malignant 39.2% 1.00 0.04
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 Stromal 38.0% 0.99 0.15
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 Tumor/Malignant 54.4% 0.98 0.11
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 Immune 88.9% 0.99 0.04
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 Other 42.1% 0.48 0.73
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 Tumor/Malignant 94.5% 0.79 0.34
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 Tumor/Malignant 25.0% 0.48 0.77
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 Tumor/Malignant 76.5% 0.98 0.09
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 Stromal 25.9% 0.70 0.62
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 Tumor/Malignant 67.2% 0.95 0.14
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 Tumor/Malignant 58.6% 0.98 0.09
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 Tumor/Malignant 35.4% 0.75 0.60
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 Tumor/Malignant 65.1% 0.98 0.09
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 Tumor/Malignant 54.7% 0.88 0.26
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 Immune 50.7% 0.98 0.10
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 Tumor/Malignant 79.5% 0.98 0.06
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 Immune 88.3% 1.00 0.01
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 Tumor/Malignant 77.8% 0.98 0.06
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 Tumor/Malignant 38.2% 0.97 0.16
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 Tumor/Malignant 72.5% 0.92 0.14

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 Tumor/Malignant 39.7% 1.00 0.04
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 Stromal 34.0% 0.99 0.11
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 Tumor/Malignant 52.5% 0.98 0.08
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 Lymphoid 84.2% 1.00 0.03
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 Other 57.6% 0.44 0.80
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 Tumor/Malignant 94.5% 0.79 0.34
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 Tumor/Malignant 25.1% 0.47 0.81
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 Tumor/Malignant 66.2% 1.00 0.03
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 Stromal 22.0% 0.73 0.58
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 Tumor/Malignant 53.6% 0.99 0.06
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 Tumor/Malignant 58.6% 0.98 0.09
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 Tumor/Malignant 34.6% 1.00 0.04
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 Tumor/Malignant 67.4% 0.97 0.10
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 Tumor/Malignant 54.7% 0.88 0.26
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 Myeloid 50.0% 0.97 0.12
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 Tumor/Malignant 59.6% 0.98 0.05
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 Lymphoid 87.8% 1.00 0.01
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 Tumor/Malignant 73.8% 0.99 0.03
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 Tumor/Malignant 44.3% 0.95 0.20
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 Tumor/Malignant 74.1% 0.92 0.16

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 Tumor/Malignant cell 55.3% 0.93 0.18
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 Fibroblast 43.2% 0.95 0.22
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 Tumor/Malignant cell 54.2% 0.98 0.11
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 B cell 56.5% 0.99 0.04
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 Other 61.4% 0.43 0.84
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 Tumor/Malignant cell 94.5% 0.79 0.34
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 Tumor/Malignant cell 27.8% 0.94 0.27
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 Tumor/Malignant cell 75.5% 0.98 0.09
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 Fibroblast 24.4% 0.57 0.74
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 Tumor/Malignant cell 66.6% 0.96 0.14
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 Tumor/Malignant cell 59.4% 0.98 0.10
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 Tumor/Malignant cell 51.4% 0.95 0.20
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 Tumor/Malignant cell 65.7% 0.98 0.09
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 Tumor/Malignant cell 54.7% 0.88 0.26
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 Granulocyte 25.6% 0.51 0.65
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 Tumor/Malignant cell 79.0% 0.98 0.06
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 B cell 75.2% 0.95 0.15
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 Tumor/Malignant cell 77.7% 0.98 0.06
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 Tumor/Malignant cell 59.4% 0.90 0.31
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 Tumor/Malignant cell 76.7% 0.91 0.18