scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 0.04 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 0.06 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 0.21 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 0.05 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 0.04 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 0.25 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 0.06 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 0.21 0.15 Weakly structured Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C5,11 Lung Primary cancer 2,509 0.35 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,12 Lung Primary cancer 1,025 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,13 Lung Primary cancer 2,807 0.37 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C5,14 Lung Primary cancer 5,840 0.09 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C5,15 Lung Primary cancer 363 0.15 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,2 Lung Primary cancer 55 0.04 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C5,3 Lung Primary cancer 3,138 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C5,4 Lung Primary cancer 2,948 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,5 Lung Primary cancer 2,510 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,6 Lung Primary cancer 2,005 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,8 Lung Primary cancer 4,173 0.22 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C5,9 Lung Primary cancer 3,209 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,1 Lung Primary cancer 1,348 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C6,10 Lung Primary cancer 117 0.25 0.05 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,11 Lung Primary cancer 3,339 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,13 Lung Primary cancer 2,332 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,14 Lung Primary cancer 6,300 0.13 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C6,15 Lung Primary cancer 4,927 0.13 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C6,2 Lung Primary cancer 4,303 0.19 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,3 Lung Primary cancer 193 0.21 0.14 Weakly structured Weakly segregated