scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 Tumor/Malignant 51.1% 0.97 0.11
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 Tumor/Malignant 38.6% 0.30 1.07
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 Immune 27.0% 0.49 0.83
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 Tumor/Malignant 54.4% 0.96 0.15
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 Stromal 28.8% 0.79 0.53
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 Tumor/Malignant 31.7% 0.95 0.24
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 Tumor/Malignant 51.6% 0.99 0.03
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 Tumor/Malignant 88.0% 1.00 0.01
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 Tumor/Malignant 68.7% 0.99 0.07
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 Stromal 39.3% 0.68 0.55
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 Immune 31.2% 0.89 0.42
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 Tumor/Malignant 71.9% 0.99 0.06
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 Tumor/Malignant 30.5% 0.86 0.37
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 Tumor/Malignant 76.7% 0.97 0.09
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 Immune 40.5% 0.33 0.93
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 Immune 27.1% 0.43 0.96
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 Immune 26.5% 0.82 0.48
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 Tumor/Malignant 84.7% 0.99 0.04
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 Stromal 40.5% 0.87 0.34
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 Tumor/Malignant 49.5% 0.92 0.30

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 Tumor/Malignant 50.2% 0.97 0.09
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 Other 31.3% 0.39 0.97
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 Stromal 23.8% 0.33 1.04
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 Tumor/Malignant 53.3% 0.97 0.14
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 Tumor/Malignant 23.6% 0.95 0.21
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 Tumor/Malignant 31.9% 0.95 0.24
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 Tumor/Malignant 50.7% 0.99 0.06
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 Tumor/Malignant 88.0% 1.00 0.01
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 Tumor/Malignant 61.2% 1.00 0.03
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 Stromal 31.6% 0.54 0.62
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 Myeloid 24.2% 0.91 0.34
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 Tumor/Malignant 45.7% 0.99 0.07
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 Tumor/Malignant 28.2% 0.87 0.36
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 Tumor/Malignant 67.2% 0.99 0.04
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 Stromal 27.7% 0.32 1.05
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 Tumor/Malignant 22.1% 0.87 0.46
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 Myeloid 24.1% 0.31 1.11
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 Tumor/Malignant 81.6% 0.99 0.04
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 Stromal 31.5% 0.94 0.24
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 Tumor/Malignant 43.0% 0.76 0.57

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 Tumor/Malignant cell 50.9% 0.97 0.11
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 Other 31.9% 0.41 0.99
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 T cell 28.1% 0.53 0.89
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 Tumor/Malignant cell 55.8% 0.96 0.17
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 Fibroblast 31.9% 0.76 0.59
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 Tumor/Malignant cell 41.3% 0.91 0.36
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 Tumor/Malignant cell 64.8% 0.96 0.14
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 Tumor/Malignant cell 88.6% 1.00 0.01
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 Tumor/Malignant cell 73.8% 0.98 0.10
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 Fibroblast 44.1% 0.59 0.64
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 Granulocyte 30.4% 0.54 0.73
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 Tumor/Malignant cell 73.7% 0.98 0.07
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 Tumor/Malignant cell 41.2% 0.78 0.52
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 Tumor/Malignant cell 69.9% 0.99 0.06
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 Fibroblast 25.7% 0.60 0.74
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 Tumor/Malignant cell 22.4% 0.85 0.47
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 Other 19.9% 0.27 1.20
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 Tumor/Malignant cell 84.9% 0.99 0.04
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 Fibroblast 40.5% 0.87 0.34
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 Tumor/Malignant cell 55.5% 0.90 0.35