scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 0.01 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 0.19 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 0.01 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 0.19 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__88_C6,5 Lung Primary cancer 3,582 0.42 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__88_C6,6 Lung Primary cancer 715 0.22 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,7 Lung Primary cancer 2,882 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C6,9 Lung Primary cancer 3,064 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,1 Lung Primary cancer 2,125 0.33 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,10 Lung Primary cancer 2,837 0.25 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,11 Lung Primary cancer 3,953 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,12 Lung Primary cancer 3,520 0.01 0.15 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__88_C7,13 Lung Primary cancer 3,749 0.11 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C7,15 Lung Primary cancer 866 0.11 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C7,2 Lung Primary cancer 3,547 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,3 Lung Primary cancer 2,874 0.24 0.18 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C7,4 Lung Primary cancer 1,179 0.28 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,5 Lung Primary cancer 2,702 0.07 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__88_C7,6 Lung Primary cancer 1,020 0.19 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,7 Lung Primary cancer 3,478 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,8 Lung Primary cancer 4,127 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C7,9 Lung Primary cancer 3,497 0.22 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__88_C8,1 Lung Primary cancer 1,819 0.31 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__88_C8,10 Lung Primary cancer 2,641 0.19 0.12 Weakly structured Weakly segregated