scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B5,1 Lung Primary cancer 5,849 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,10 Lung Primary cancer 3,111 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,11 Lung Primary cancer 3,572 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,12 Lung Primary cancer 3,967 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,13 Lung Primary cancer 2,364 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,14 Lung Primary cancer 3,391 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,15 Lung Primary cancer 2,515 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,16 Lung Primary cancer 2,891 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,17 Lung Primary cancer 3,442 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,2 Lung Primary cancer 3,313 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,3 Lung Primary cancer 3,516 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,4 Lung Primary cancer 3,890 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,5 Lung Primary cancer 3,985 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,6 Lung Primary cancer 3,188 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,7 Lung Primary cancer 3,997 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,8 Lung Primary cancer 2,196 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,9 Lung Primary cancer 3,264 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,1 Lung Primary cancer 5,482 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,10 Lung Primary cancer 3,587 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,11 Lung Primary cancer 3,189 0.23 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B5,1 Lung Primary cancer 5,849 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,10 Lung Primary cancer 3,111 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,11 Lung Primary cancer 3,572 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,12 Lung Primary cancer 3,967 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,13 Lung Primary cancer 2,364 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,14 Lung Primary cancer 3,391 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,15 Lung Primary cancer 2,515 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,16 Lung Primary cancer 2,891 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,17 Lung Primary cancer 3,442 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,2 Lung Primary cancer 3,313 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,3 Lung Primary cancer 3,516 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,4 Lung Primary cancer 3,890 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,5 Lung Primary cancer 3,985 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,6 Lung Primary cancer 3,188 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,7 Lung Primary cancer 3,997 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,8 Lung Primary cancer 2,196 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B5,9 Lung Primary cancer 3,264 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,1 Lung Primary cancer 5,482 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,10 Lung Primary cancer 3,587 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,11 Lung Primary cancer 3,189 0.23 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B5,1 Lung Primary cancer 5,849 0.08 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B5,10 Lung Primary cancer 3,111 0.32 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,11 Lung Primary cancer 3,572 0.10 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B5,12 Lung Primary cancer 3,967 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,13 Lung Primary cancer 2,364 0.09 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B5,14 Lung Primary cancer 3,391 0.13 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B5,15 Lung Primary cancer 2,515 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,16 Lung Primary cancer 2,891 0.26 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,17 Lung Primary cancer 3,442 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,2 Lung Primary cancer 3,313 0.15 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B5,3 Lung Primary cancer 3,516 0.08 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B5,4 Lung Primary cancer 3,890 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,5 Lung Primary cancer 3,985 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,6 Lung Primary cancer 3,188 0.32 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,7 Lung Primary cancer 3,997 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,8 Lung Primary cancer 2,196 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B5,9 Lung Primary cancer 3,264 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B6,1 Lung Primary cancer 5,482 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,10 Lung Primary cancer 3,587 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B6,11 Lung Primary cancer 3,189 0.23 0.14 Weakly structured Weakly segregated