scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B6,12 Lung Primary cancer 3,515 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,13 Lung Primary cancer 1,900 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,14 Lung Primary cancer 3,094 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,15 Lung Primary cancer 2,936 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,16 Lung Primary cancer 2,433 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,17 Lung Primary cancer 3,239 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,2 Lung Primary cancer 2,696 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,3 Lung Primary cancer 3,549 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,4 Lung Primary cancer 1,915 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,5 Lung Primary cancer 2,363 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,6 Lung Primary cancer 2,579 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,7 Lung Primary cancer 3,749 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,8 Lung Primary cancer 2,866 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,9 Lung Primary cancer 5,561 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,1 Lung Primary cancer 823 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,10 Lung Primary cancer 3,104 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,11 Lung Primary cancer 3,417 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,12 Lung Primary cancer 3,705 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,13 Lung Primary cancer 3,302 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,14 Lung Primary cancer 3,561 0.28 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B6,12 Lung Primary cancer 3,515 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,13 Lung Primary cancer 1,900 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,14 Lung Primary cancer 3,094 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,15 Lung Primary cancer 2,936 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,16 Lung Primary cancer 2,433 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,17 Lung Primary cancer 3,239 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,2 Lung Primary cancer 2,696 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,3 Lung Primary cancer 3,549 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,4 Lung Primary cancer 1,915 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,5 Lung Primary cancer 2,363 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,6 Lung Primary cancer 2,579 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B6,7 Lung Primary cancer 3,749 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B6,8 Lung Primary cancer 2,866 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B6,9 Lung Primary cancer 5,561 0.05 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,1 Lung Primary cancer 823 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,10 Lung Primary cancer 3,104 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,11 Lung Primary cancer 3,417 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,12 Lung Primary cancer 3,705 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,13 Lung Primary cancer 3,302 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,14 Lung Primary cancer 3,561 0.30 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B6,12 Lung Primary cancer 3,515 0.06 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B6,13 Lung Primary cancer 1,900 0.14 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B6,14 Lung Primary cancer 3,094 0.43 0.15 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B6,15 Lung Primary cancer 2,936 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,16 Lung Primary cancer 2,433 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,17 Lung Primary cancer 3,239 0.15 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,2 Lung Primary cancer 2,696 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,3 Lung Primary cancer 3,549 0.08 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B6,4 Lung Primary cancer 1,915 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,5 Lung Primary cancer 2,363 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,6 Lung Primary cancer 2,579 0.11 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B6,7 Lung Primary cancer 3,749 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B6,8 Lung Primary cancer 2,866 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B6,9 Lung Primary cancer 5,561 0.05 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,1 Lung Primary cancer 823 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,10 Lung Primary cancer 3,104 0.08 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,11 Lung Primary cancer 3,417 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,12 Lung Primary cancer 3,705 0.10 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,13 Lung Primary cancer 3,302 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,14 Lung Primary cancer 3,561 0.33 0.11 Weakly structured Weakly segregated