scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 Immune 63.1% 0.99 0.05
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 Tumor/Malignant 35.3% 0.95 0.16
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 Tumor/Malignant 45.5% 0.93 0.25
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 Tumor/Malignant 64.0% 0.99 0.04
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 Tumor/Malignant 47.0% 0.88 0.36
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 Tumor/Malignant 37.1% 0.95 0.17
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 Tumor/Malignant 62.5% 0.99 0.07
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 Tumor/Malignant 38.6% 0.93 0.26
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 Tumor/Malignant 31.5% 0.94 0.27
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 Tumor/Malignant 49.7% 1.00 0.03
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 Immune 23.9% 0.62 0.69
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 Tumor/Malignant 48.8% 0.95 0.15
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 Stromal 36.9% 0.47 0.81
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 Stromal 26.0% 0.72 0.64
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 Tumor/Malignant 69.9% 0.98 0.07
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 Stromal 46.1% 0.75 0.54
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 Tumor/Malignant 53.9% 0.94 0.20
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 Tumor/Malignant 81.0% 0.96 0.12
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 Other 25.7% 0.65 0.68
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 Immune 51.0% 0.91 0.26

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 Lymphoid 60.0% 1.00 0.03
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 Tumor/Malignant 34.2% 0.97 0.13
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 Tumor/Malignant 40.1% 0.95 0.19
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 Tumor/Malignant 63.7% 0.99 0.04
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 Tumor/Malignant 38.0% 0.77 0.60
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 Tumor/Malignant 37.1% 0.95 0.17
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 Tumor/Malignant 48.6% 0.99 0.06
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 Tumor/Malignant 32.7% 0.96 0.17
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 Tumor/Malignant 27.1% 0.95 0.21
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 Tumor/Malignant 55.0% 0.98 0.07
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 Tumor/Malignant 22.2% 0.49 0.85
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 Tumor/Malignant 47.5% 0.96 0.14
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 Stromal 30.5% 0.88 0.40
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 Stromal 25.3% 0.72 0.64
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 Tumor/Malignant 79.0% 0.97 0.07
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 Stromal 35.6% 0.79 0.55
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 Tumor/Malignant 51.5% 0.95 0.17
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 Tumor/Malignant 68.2% 0.99 0.04
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 Tumor/Malignant 22.3% 0.96 0.17
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 Myeloid 26.7% 0.99 0.05

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 B cell 63.5% 0.86 0.26
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 Tumor/Malignant cell 35.4% 0.96 0.16
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 Tumor/Malignant cell 45.8% 0.92 0.25
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 Tumor/Malignant cell 76.4% 0.96 0.13
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 Tumor/Malignant cell 44.0% 0.89 0.34
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 Tumor/Malignant cell 37.7% 0.95 0.18
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 Tumor/Malignant cell 63.7% 0.99 0.08
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 Tumor/Malignant cell 38.7% 0.93 0.27
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 Tumor/Malignant cell 35.2% 0.91 0.34
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 Tumor/Malignant cell 65.1% 0.96 0.14
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 Tumor/Malignant cell 23.2% 0.46 0.87
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 Tumor/Malignant cell 52.1% 0.94 0.21
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 Fibroblast 41.0% 0.49 0.83
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 Fibroblast 28.1% 0.71 0.69
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 Tumor/Malignant cell 83.5% 0.97 0.07
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 Fibroblast 55.0% 0.90 0.29
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 Tumor/Malignant cell 54.0% 0.94 0.20
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 Tumor/Malignant cell 80.4% 0.97 0.11
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 Other 24.0% 0.65 0.78
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 Myeloid cell, unspecified 29.1% 0.81 0.52