scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 0.22 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 0.23 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B7,15 Lung Primary cancer 5,889 0.39 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B7,16 Lung Primary cancer 3,895 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B7,17 Lung Primary cancer 2,340 0.31 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,2 Lung Primary cancer 3,451 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,3 Lung Primary cancer 2,129 0.14 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B7,4 Lung Primary cancer 1,543 0.38 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B7,5 Lung Primary cancer 2,916 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,6 Lung Primary cancer 3,524 0.38 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B7,7 Lung Primary cancer 3,227 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,8 Lung Primary cancer 3,567 0.24 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B7,9 Lung Primary cancer 3,924 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,1 Lung Primary cancer 2,457 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,10 Lung Primary cancer 2,512 0.15 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,11 Lung Primary cancer 1,996 0.24 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,12 Lung Primary cancer 4,012 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,13 Lung Primary cancer 2,892 0.14 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B8,14 Lung Primary cancer 2,759 0.33 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,15 Lung Primary cancer 4,072 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B8,16 Lung Primary cancer 3,106 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B8,17 Lung Primary cancer 3,192 0.35 0.11 Highly modular Weakly segregated