scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C1,7 Lung Primary cancer 4,101 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C1,8 Lung Primary cancer 3,113 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C1,9 Lung Primary cancer 3,009 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,1 Lung Primary cancer 4,243 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,10 Lung Primary cancer 3,797 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,11 Lung Primary cancer 2,770 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,12 Lung Primary cancer 3,309 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,13 Lung Primary cancer 4,144 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,14 Lung Primary cancer 2,934 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C2,15 Lung Primary cancer 973 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,16 Lung Primary cancer 7,105 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,2 Lung Primary cancer 1,267 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,3 Lung Primary cancer 2,888 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,4 Lung Primary cancer 3,614 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,5 Lung Primary cancer 3,120 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,6 Lung Primary cancer 4,083 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,7 Lung Primary cancer 2,572 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,8 Lung Primary cancer 2,498 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,9 Lung Primary cancer 3,369 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,1 Lung Primary cancer 2,395 0.14 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C1,7 Lung Primary cancer 4,101 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C1,8 Lung Primary cancer 3,113 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C1,9 Lung Primary cancer 3,009 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,1 Lung Primary cancer 4,243 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,10 Lung Primary cancer 3,797 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,11 Lung Primary cancer 2,770 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,12 Lung Primary cancer 3,309 0.06 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,13 Lung Primary cancer 4,144 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,14 Lung Primary cancer 2,934 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C2,15 Lung Primary cancer 973 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,16 Lung Primary cancer 7,105 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C2,2 Lung Primary cancer 1,267 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,3 Lung Primary cancer 2,888 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,4 Lung Primary cancer 3,614 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,5 Lung Primary cancer 3,120 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,6 Lung Primary cancer 4,083 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,7 Lung Primary cancer 2,572 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C2,8 Lung Primary cancer 2,498 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C2,9 Lung Primary cancer 3,369 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,1 Lung Primary cancer 2,395 0.14 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C1,7 Lung Primary cancer 4,101 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C1,8 Lung Primary cancer 3,113 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C1,9 Lung Primary cancer 3,009 0.27 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,1 Lung Primary cancer 4,243 0.31 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,10 Lung Primary cancer 3,797 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C2,11 Lung Primary cancer 2,770 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,12 Lung Primary cancer 3,309 0.06 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C2,13 Lung Primary cancer 4,144 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,14 Lung Primary cancer 2,934 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C2,15 Lung Primary cancer 973 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,16 Lung Primary cancer 7,105 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,2 Lung Primary cancer 1,267 0.21 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,3 Lung Primary cancer 2,888 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,4 Lung Primary cancer 3,614 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,5 Lung Primary cancer 3,120 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,6 Lung Primary cancer 4,083 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,7 Lung Primary cancer 2,572 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C2,8 Lung Primary cancer 2,498 0.12 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C2,9 Lung Primary cancer 3,369 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,1 Lung Primary cancer 2,395 0.14 0.11 Homogeneous Weakly segregated