scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 Tumor/Malignant 38.2% 0.97 0.15
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 Tumor/Malignant 37.8% 0.99 0.05
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 Stromal 71.6% 0.95 0.15
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 Stromal 60.4% 0.94 0.16
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 Stromal 61.8% 0.91 0.25
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 Stromal 58.0% 0.85 0.37
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 Immune 61.0% 0.99 0.05
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 Tumor/Malignant 34.0% 0.67 0.62
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 Stromal 22.5% 0.81 0.46
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 Tumor/Malignant 47.8% 0.92 0.26
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 Tumor/Malignant 45.2% 0.94 0.21
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 Stromal 30.5% 0.59 0.79
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 Tumor/Malignant 45.0% 0.93 0.25
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 Tumor/Malignant 62.9% 0.95 0.16
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 Tumor/Malignant 47.1% 0.97 0.12
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 Tumor/Malignant 62.4% 0.96 0.14
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 Tumor/Malignant 50.4% 0.99 0.07
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 Tumor/Malignant 37.4% 0.95 0.18
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 Stromal 79.9% 0.98 0.06
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 Stromal 75.2% 0.98 0.07

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 Tumor/Malignant 38.9% 0.96 0.16
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 Tumor/Malignant 40.4% 0.98 0.07
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 Stromal 53.7% 0.99 0.04
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 Stromal 60.6% 0.94 0.17
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 Stromal 35.7% 0.78 0.46
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 Stromal 58.7% 0.84 0.37
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 Lymphoid 46.5% 0.99 0.06
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 Tumor/Malignant 31.2% 0.69 0.59
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 Stromal 26.5% 0.35 1.09
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 Tumor/Malignant 34.9% 0.95 0.19
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 Stromal 26.6% 0.80 0.49
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 Stromal 30.8% 0.86 0.41
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 Tumor/Malignant 37.8% 0.96 0.16
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 Tumor/Malignant 46.8% 0.99 0.04
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 Tumor/Malignant 47.3% 0.97 0.12
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 Tumor/Malignant 50.5% 0.99 0.07
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 Tumor/Malignant 62.5% 0.96 0.17
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 Tumor/Malignant 36.2% 0.96 0.17
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 Stromal 78.6% 0.99 0.05
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 Stromal 67.7% 0.99 0.03

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 Tumor/Malignant cell 44.3% 0.94 0.25
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 Tumor/Malignant cell 51.8% 0.94 0.18
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 Fibroblast 70.5% 0.95 0.15
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 Fibroblast 61.6% 0.93 0.20
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 Fibroblast 62.8% 0.90 0.26
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 Fibroblast 67.1% 0.79 0.49
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 T cell 59.6% 0.76 0.46
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 Tumor/Malignant cell 31.3% 0.69 0.59
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 Endothelial cell 21.0% 0.30 1.19
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 Tumor/Malignant cell 53.9% 0.90 0.33
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 Tumor/Malignant cell 45.2% 0.94 0.22
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 Fibroblast 36.1% 0.81 0.51
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 Tumor/Malignant cell 45.4% 0.93 0.26
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 Tumor/Malignant cell 62.8% 0.95 0.16
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 Tumor/Malignant cell 50.5% 0.95 0.17
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 Tumor/Malignant cell 64.7% 0.96 0.16
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 Tumor/Malignant cell 64.6% 0.95 0.18
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 Tumor/Malignant cell 46.8% 0.91 0.28
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 Fibroblast 79.2% 0.98 0.06
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 Fibroblast 77.5% 0.97 0.09