scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 0.01 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 0.08 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 0.11 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 0.10 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 0.06 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 0.01 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 0.04 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 0.11 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C3,10 Lung Primary cancer 4,126 0.37 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C3,11 Lung Primary cancer 3,559 0.36 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C3,12 Lung Primary cancer 5,911 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,13 Lung Primary cancer 4,207 0.11 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,14 Lung Primary cancer 3,826 0.06 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,15 Lung Primary cancer 283 0.02 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,16 Lung Primary cancer 5,848 0.13 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,2 Lung Primary cancer 2,343 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,3 Lung Primary cancer 3,110 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,4 Lung Primary cancer 3,721 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,5 Lung Primary cancer 2,899 0.35 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C3,6 Lung Primary cancer 2,613 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C3,7 Lung Primary cancer 3,382 0.33 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,8 Lung Primary cancer 2,698 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C3,9 Lung Primary cancer 2,511 0.38 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C4,1 Lung Primary cancer 1,967 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C4,10 Lung Primary cancer 3,736 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,11 Lung Primary cancer 3,999 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,12 Lung Primary cancer 5,572 0.05 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C4,13 Lung Primary cancer 4,073 0.11 0.13 Homogeneous Weakly segregated