scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 Stromal 69.9% 0.99 0.07
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 Stromal 59.0% 0.52 0.78
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 Immune 65.6% 0.98 0.07
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 Tumor/Malignant 42.1% 0.86 0.39
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 Stromal 30.0% 0.55 0.89
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 Tumor/Malignant 44.3% 0.96 0.15
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 Tumor/Malignant 33.8% 0.95 0.19
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 Stromal 39.4% 0.81 0.50
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 Tumor/Malignant 52.8% 0.98 0.10
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 Tumor/Malignant 69.9% 0.90 0.26
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 Stromal 27.6% 0.80 0.60
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 Tumor/Malignant 34.0% 0.90 0.35
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 Tumor/Malignant 37.6% 0.96 0.16
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 Stromal 44.9% 0.75 0.57
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 Tumor/Malignant 61.3% 0.97 0.15
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 Tumor/Malignant 42.9% 0.75 0.56
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 Tumor/Malignant 28.5% 0.96 0.21
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 Other 28.0% 0.64 0.58
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 Immune 73.6% 0.99 0.04
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 Tumor/Malignant 88.5% 0.98 0.07

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 Stromal 69.9% 0.99 0.07
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 Stromal 51.0% 0.47 0.82
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 Lymphoid 57.8% 0.99 0.06
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 Tumor/Malignant 43.8% 0.85 0.40
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 Stromal 25.5% 0.81 0.52
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 Tumor/Malignant 44.9% 0.96 0.16
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 Tumor/Malignant 30.8% 0.97 0.14
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 Stromal 27.4% 0.86 0.41
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 Tumor/Malignant 53.1% 0.98 0.10
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 Tumor/Malignant 38.6% 1.00 0.05
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 Stromal 24.2% 0.80 0.60
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 Tumor/Malignant 31.8% 0.90 0.31
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 Tumor/Malignant 33.4% 0.98 0.10
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 Stromal 47.5% 0.74 0.59
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 Tumor/Malignant 46.7% 0.99 0.05
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 Tumor/Malignant 41.1% 0.76 0.58
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 Tumor/Malignant 28.9% 0.96 0.22
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 Other 28.7% 0.64 0.58
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 Lymphoid 70.2% 0.99 0.04
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 Tumor/Malignant 80.4% 1.00 0.02

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 Fibroblast 66.6% 0.99 0.06
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 Fibroblast 50.2% 0.49 0.81
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 T cell 37.3% 0.76 0.49
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 Tumor/Malignant cell 42.9% 0.85 0.40
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 Fibroblast 31.9% 0.77 0.61
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 Tumor/Malignant cell 44.8% 0.96 0.17
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 Tumor/Malignant cell 34.5% 0.94 0.20
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 Fibroblast 35.5% 0.82 0.53
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 Tumor/Malignant cell 62.8% 0.95 0.16
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 Tumor/Malignant cell 69.5% 0.91 0.26
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 Tumor/Malignant cell 32.1% 0.88 0.38
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 Tumor/Malignant cell 36.4% 0.88 0.38
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 Tumor/Malignant cell 37.4% 0.96 0.16
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 Fibroblast 57.1% 0.85 0.37
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 Tumor/Malignant cell 62.6% 0.96 0.16
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 Tumor/Malignant cell 58.0% 0.87 0.36
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 Tumor/Malignant cell 35.6% 0.92 0.34
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 Other 38.9% 0.90 0.29
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 B cell 44.1% 0.98 0.11
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 Tumor/Malignant cell 80.5% 1.00 0.02