scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 0.02 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 0.14 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 0.02 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 0.05 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 0.38 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 0.26 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 0.14 0.12 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C4,14 Lung Primary cancer 3,144 0.02 0.21 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C4,15 Lung Primary cancer 249 0.06 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C4,16 Lung Primary cancer 6,459 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,2 Lung Primary cancer 680 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,3 Lung Primary cancer 3,662 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,4 Lung Primary cancer 4,287 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C4,5 Lung Primary cancer 3,460 0.49 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C4,6 Lung Primary cancer 2,738 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,7 Lung Primary cancer 3,332 0.30 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,8 Lung Primary cancer 2,762 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C4,9 Lung Primary cancer 2,185 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,1 Lung Primary cancer 2,668 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,10 Lung Primary cancer 1,820 0.38 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C5,11 Lung Primary cancer 3,674 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,12 Lung Primary cancer 4,098 0.14 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C5,13 Lung Primary cancer 4,056 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,14 Lung Primary cancer 3,531 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,15 Lung Primary cancer 1,378 0.27 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,16 Lung Primary cancer 5,027 0.09 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C5,2 Lung Primary cancer 4,032 0.14 0.10 Homogeneous Weakly segregated