scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 Tumor/Malignant 54.6% 0.94 0.19
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 Stromal 25.8% 0.76 0.55
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 Tumor/Malignant 56.9% 0.95 0.17
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 Tumor/Malignant 77.6% 0.98 0.08
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 Stromal 46.1% 0.89 0.36
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 Tumor/Malignant 80.4% 0.97 0.09
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 Immune 33.2% 0.92 0.28
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 Tumor/Malignant 33.2% 0.92 0.27
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 Stromal 41.7% 0.86 0.36
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 Stromal 67.2% 0.99 0.04
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 Tumor/Malignant 69.8% 0.97 0.12
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 Tumor/Malignant 42.9% 0.90 0.36
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 Tumor/Malignant 45.4% 0.96 0.16
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 Stromal 38.3% 0.79 0.48
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 Immune 98.2% 1.00 0.01
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 Tumor/Malignant 63.6% 0.95 0.16
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 Tumor/Malignant 34.6% 0.96 0.14
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 Stromal 40.9% 0.53 0.83
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 Tumor/Malignant 58.9% 0.97 0.11
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 Tumor/Malignant 61.0% 0.99 0.05

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 Tumor/Malignant 49.0% 0.97 0.14
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 Stromal 31.8% 0.50 0.84
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 Tumor/Malignant 42.0% 0.99 0.05
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 Tumor/Malignant 66.3% 0.99 0.04
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 Stromal 32.6% 0.92 0.31
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 Tumor/Malignant 80.3% 0.97 0.09
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 Myeloid 24.1% 0.50 0.87
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 Tumor/Malignant 34.3% 0.91 0.29
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 Stromal 36.2% 0.89 0.30
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 Stromal 71.9% 0.98 0.07
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 Tumor/Malignant 58.4% 0.99 0.05
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 Tumor/Malignant 33.5% 0.94 0.25
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 Tumor/Malignant 46.0% 0.96 0.17
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 Other 27.5% 0.50 0.63
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 Lymphoid 93.6% 1.00 0.01
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 Tumor/Malignant 46.5% 1.00 0.03
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 Tumor/Malignant 33.4% 0.97 0.11
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 Stromal 21.9% 0.42 0.98
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 Tumor/Malignant 48.5% 0.99 0.03
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 Tumor/Malignant 53.5% 0.99 0.04

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 Tumor/Malignant cell 55.5% 0.93 0.20
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 Other 30.6% 0.72 0.65
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 Tumor/Malignant cell 59.8% 0.94 0.20
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 Tumor/Malignant cell 78.1% 0.97 0.09
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 Fibroblast 43.4% 0.87 0.43
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 Tumor/Malignant cell 81.0% 0.97 0.09
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 Myeloid cell, unspecified 37.3% 0.79 0.52
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 Tumor/Malignant cell 40.4% 0.89 0.37
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 Fibroblast 39.6% 0.86 0.35
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 Fibroblast 75.3% 0.97 0.10
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 Tumor/Malignant cell 69.7% 0.97 0.12
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 Tumor/Malignant cell 44.2% 0.89 0.38
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 Tumor/Malignant cell 51.6% 0.94 0.24
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 Fibroblast 38.6% 0.60 0.70
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 B cell 81.0% 0.99 0.05
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 Tumor/Malignant cell 60.7% 0.96 0.14
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 Tumor/Malignant cell 35.0% 0.96 0.14
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 Fibroblast 27.8% 0.75 0.62
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 Tumor/Malignant cell 60.6% 0.97 0.13
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 Tumor/Malignant cell 61.0% 0.99 0.05