scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 0.00 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 0.41 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 0.13 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 0.00 -0.03 Homogeneous Weakly mixed
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 0.25 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 0.41 0.10 Highly modular Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C5,3 Lung Primary cancer 3,017 0.29 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,4 Lung Primary cancer 2,980 0.18 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,5 Lung Primary cancer 2,204 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,6 Lung Primary cancer 4,848 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,7 Lung Primary cancer 3,338 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C5,8 Lung Primary cancer 2,441 0.13 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C5,9 Lung Primary cancer 1,960 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,1 Lung Primary cancer 2,335 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,10 Lung Primary cancer 2,263 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,11 Lung Primary cancer 6,002 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C6,12 Lung Primary cancer 3,479 0.17 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,13 Lung Primary cancer 4,420 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,14 Lung Primary cancer 2,111 0.33 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,15 Lung Primary cancer 1,193 0.22 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,16 Lung Primary cancer 6,448 0.01 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C6,2 Lung Primary cancer 3,632 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,3 Lung Primary cancer 3,094 0.44 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C6,4 Lung Primary cancer 2,780 0.13 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C6,5 Lung Primary cancer 1,512 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,6 Lung Primary cancer 3,952 0.41 0.09 Highly modular Weakly segregated