scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C6,7 Lung Primary cancer 2,958 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,8 Lung Primary cancer 3,105 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,9 Lung Primary cancer 2,279 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,1 Lung Primary cancer 3,158 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,10 Lung Primary cancer 2,719 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,11 Lung Primary cancer 3,325 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,12 Lung Primary cancer 3,230 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,13 Lung Primary cancer 3,467 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,14 Lung Primary cancer 1,598 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,15 Lung Primary cancer 2,553 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,16 Lung Primary cancer 5,544 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,2 Lung Primary cancer 3,873 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,3 Lung Primary cancer 2,937 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,4 Lung Primary cancer 2,526 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,5 Lung Primary cancer 2,528 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,6 Lung Primary cancer 2,883 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,7 Lung Primary cancer 3,570 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,8 Lung Primary cancer 3,179 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,9 Lung Primary cancer 3,931 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C8,1 Lung Primary cancer 1,215 0.31 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C6,7 Lung Primary cancer 2,958 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C6,8 Lung Primary cancer 3,105 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C6,9 Lung Primary cancer 2,279 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,1 Lung Primary cancer 3,158 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,10 Lung Primary cancer 2,719 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,11 Lung Primary cancer 3,325 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,12 Lung Primary cancer 3,230 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,13 Lung Primary cancer 3,467 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,14 Lung Primary cancer 1,598 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,15 Lung Primary cancer 2,553 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,16 Lung Primary cancer 5,544 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,2 Lung Primary cancer 3,873 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,3 Lung Primary cancer 2,937 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,4 Lung Primary cancer 2,526 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,5 Lung Primary cancer 2,528 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,6 Lung Primary cancer 2,883 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,7 Lung Primary cancer 3,570 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_C7,8 Lung Primary cancer 3,179 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_C7,9 Lung Primary cancer 3,931 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C8,1 Lung Primary cancer 1,215 0.31 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_C6,7 Lung Primary cancer 2,958 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C6,8 Lung Primary cancer 3,105 0.09 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C6,9 Lung Primary cancer 2,279 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,1 Lung Primary cancer 3,158 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,10 Lung Primary cancer 2,719 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C7,11 Lung Primary cancer 3,325 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,12 Lung Primary cancer 3,230 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C7,13 Lung Primary cancer 3,467 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,14 Lung Primary cancer 1,598 0.08 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,15 Lung Primary cancer 2,553 0.11 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C7,16 Lung Primary cancer 5,544 0.10 0.15 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_C7,2 Lung Primary cancer 3,873 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,3 Lung Primary cancer 2,937 0.14 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C7,4 Lung Primary cancer 2,526 0.16 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,5 Lung Primary cancer 2,528 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,6 Lung Primary cancer 2,883 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,7 Lung Primary cancer 3,570 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_C7,8 Lung Primary cancer 3,179 0.45 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_C7,9 Lung Primary cancer 3,931 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_C8,1 Lung Primary cancer 1,215 0.31 0.11 Weakly structured Weakly segregated