scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A1,14 Lung Primary cancer 3,895 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A1,15 Lung Primary cancer 3,663 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A1,16 Lung Primary cancer 2,813 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,2 Lung Primary cancer 2,840 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,3 Lung Primary cancer 5,313 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A1,4 Lung Primary cancer 3,120 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,5 Lung Primary cancer 2,994 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,6 Lung Primary cancer 3,214 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,7 Lung Primary cancer 4,115 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,8 Lung Primary cancer 3,502 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,9 Lung Primary cancer 2,551 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,1 Lung Primary cancer 4,058 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A2,10 Lung Primary cancer 2,833 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,11 Lung Primary cancer 4,483 0.06 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A2,12 Lung Primary cancer 3,107 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,13 Lung Primary cancer 2,399 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,14 Lung Primary cancer 4,348 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,15 Lung Primary cancer 4,532 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,16 Lung Primary cancer 2,938 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,2 Lung Primary cancer 3,055 0.11 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A1,14 Lung Primary cancer 3,895 0.05 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A1,15 Lung Primary cancer 3,663 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A1,16 Lung Primary cancer 2,813 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,2 Lung Primary cancer 2,840 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,3 Lung Primary cancer 5,313 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A1,4 Lung Primary cancer 3,120 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,5 Lung Primary cancer 2,994 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,6 Lung Primary cancer 3,214 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,7 Lung Primary cancer 4,115 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,8 Lung Primary cancer 3,502 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A1,9 Lung Primary cancer 2,551 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,1 Lung Primary cancer 4,058 0.40 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A2,10 Lung Primary cancer 2,833 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,11 Lung Primary cancer 4,483 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,12 Lung Primary cancer 3,107 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,13 Lung Primary cancer 2,399 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,14 Lung Primary cancer 4,348 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,15 Lung Primary cancer 4,532 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,16 Lung Primary cancer 2,938 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,2 Lung Primary cancer 3,055 0.11 0.15 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A1,14 Lung Primary cancer 3,895 0.06 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A1,15 Lung Primary cancer 3,663 0.38 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A1,16 Lung Primary cancer 2,813 0.25 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,2 Lung Primary cancer 2,840 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,3 Lung Primary cancer 5,313 0.11 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A1,4 Lung Primary cancer 3,120 0.26 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,5 Lung Primary cancer 2,994 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,6 Lung Primary cancer 3,214 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,7 Lung Primary cancer 4,115 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,8 Lung Primary cancer 3,502 0.32 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A1,9 Lung Primary cancer 2,551 0.31 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,1 Lung Primary cancer 4,058 0.42 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A2,10 Lung Primary cancer 2,833 0.33 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,11 Lung Primary cancer 4,483 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,12 Lung Primary cancer 3,107 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,13 Lung Primary cancer 2,399 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,14 Lung Primary cancer 4,348 0.09 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A2,15 Lung Primary cancer 4,532 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,16 Lung Primary cancer 2,938 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,2 Lung Primary cancer 3,055 0.11 0.11 Homogeneous Weakly segregated