scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A2,3 Lung Primary cancer 4,757 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,4 Lung Primary cancer 3,024 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,5 Lung Primary cancer 2,725 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,6 Lung Primary cancer 3,103 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,7 Lung Primary cancer 3,740 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,8 Lung Primary cancer 3,151 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,9 Lung Primary cancer 1,974 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,1 Lung Primary cancer 2,855 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,10 Lung Primary cancer 3,257 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,11 Lung Primary cancer 2,281 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,12 Lung Primary cancer 2,204 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,13 Lung Primary cancer 3,916 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,14 Lung Primary cancer 4,321 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,15 Lung Primary cancer 2,466 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,16 Lung Primary cancer 3,414 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,3 Lung Primary cancer 3,141 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,4 Lung Primary cancer 3,443 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,5 Lung Primary cancer 3,456 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,6 Lung Primary cancer 4,109 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,7 Lung Primary cancer 1,742 0.26 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A2,3 Lung Primary cancer 4,757 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,4 Lung Primary cancer 3,024 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,5 Lung Primary cancer 2,725 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,6 Lung Primary cancer 3,103 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,7 Lung Primary cancer 3,740 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,8 Lung Primary cancer 3,151 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A2,9 Lung Primary cancer 1,974 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,1 Lung Primary cancer 2,855 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,10 Lung Primary cancer 3,257 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,11 Lung Primary cancer 2,281 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,12 Lung Primary cancer 2,204 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,13 Lung Primary cancer 3,916 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,14 Lung Primary cancer 4,321 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,15 Lung Primary cancer 2,466 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,16 Lung Primary cancer 3,414 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,3 Lung Primary cancer 3,141 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A3,4 Lung Primary cancer 3,443 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,5 Lung Primary cancer 3,456 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A3,6 Lung Primary cancer 4,109 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,7 Lung Primary cancer 1,742 0.31 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A2,3 Lung Primary cancer 4,757 0.08 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A2,4 Lung Primary cancer 3,024 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,5 Lung Primary cancer 2,725 0.28 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,6 Lung Primary cancer 3,103 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,7 Lung Primary cancer 3,740 0.11 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A2,8 Lung Primary cancer 3,151 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A2,9 Lung Primary cancer 1,974 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,1 Lung Primary cancer 2,855 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,10 Lung Primary cancer 3,257 0.20 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,11 Lung Primary cancer 2,281 0.30 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,12 Lung Primary cancer 2,204 0.12 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A3,13 Lung Primary cancer 3,916 0.31 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,14 Lung Primary cancer 4,321 0.05 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A3,15 Lung Primary cancer 2,466 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,16 Lung Primary cancer 3,414 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,3 Lung Primary cancer 3,141 0.07 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A3,4 Lung Primary cancer 3,443 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,5 Lung Primary cancer 3,456 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A3,6 Lung Primary cancer 4,109 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,7 Lung Primary cancer 1,742 0.31 0.09 Weakly structured Weakly segregated