scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A3,8 Lung Primary cancer 3,061 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,9 Lung Primary cancer 4,288 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,1 Lung Primary cancer 2,939 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,10 Lung Primary cancer 3,991 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,11 Lung Primary cancer 3,453 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,12 Lung Primary cancer 1,638 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,13 Lung Primary cancer 4,566 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,14 Lung Primary cancer 3,942 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,15 Lung Primary cancer 3,167 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,16 Lung Primary cancer 3,240 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,2 Lung Primary cancer 1,678 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,3 Lung Primary cancer 3,330 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,4 Lung Primary cancer 3,034 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,5 Lung Primary cancer 3,252 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,6 Lung Primary cancer 3,833 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,7 Lung Primary cancer 2,820 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,8 Lung Primary cancer 3,289 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,9 Lung Primary cancer 4,125 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,1 Lung Primary cancer 3,605 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,10 Lung Primary cancer 3,025 0.27 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A3,8 Lung Primary cancer 3,061 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A3,9 Lung Primary cancer 4,288 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,1 Lung Primary cancer 2,939 0.05 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,10 Lung Primary cancer 3,991 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,11 Lung Primary cancer 3,453 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,12 Lung Primary cancer 1,638 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,13 Lung Primary cancer 4,566 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,14 Lung Primary cancer 3,942 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,15 Lung Primary cancer 3,167 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,16 Lung Primary cancer 3,240 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,2 Lung Primary cancer 1,678 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,3 Lung Primary cancer 3,330 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,4 Lung Primary cancer 3,034 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,5 Lung Primary cancer 3,252 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,6 Lung Primary cancer 3,833 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A4,7 Lung Primary cancer 2,820 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,8 Lung Primary cancer 3,289 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A4,9 Lung Primary cancer 4,125 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,1 Lung Primary cancer 3,605 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,10 Lung Primary cancer 3,025 0.27 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A3,8 Lung Primary cancer 3,061 0.20 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A3,9 Lung Primary cancer 4,288 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,1 Lung Primary cancer 2,939 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A4,10 Lung Primary cancer 3,991 0.06 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A4,11 Lung Primary cancer 3,453 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,12 Lung Primary cancer 1,638 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,13 Lung Primary cancer 4,566 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,14 Lung Primary cancer 3,942 0.05 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A4,15 Lung Primary cancer 3,167 0.41 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A4,16 Lung Primary cancer 3,240 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,2 Lung Primary cancer 1,678 0.29 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,3 Lung Primary cancer 3,330 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,4 Lung Primary cancer 3,034 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,5 Lung Primary cancer 3,252 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,6 Lung Primary cancer 3,833 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A4,7 Lung Primary cancer 2,820 0.37 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A4,8 Lung Primary cancer 3,289 0.41 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A4,9 Lung Primary cancer 4,125 0.15 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,1 Lung Primary cancer 3,605 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,10 Lung Primary cancer 3,025 0.27 0.11 Weakly structured Weakly segregated