scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A5,11 Lung Primary cancer 2,606 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,12 Lung Primary cancer 3,658 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,13 Lung Primary cancer 997 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,14 Lung Primary cancer 3,501 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,15 Lung Primary cancer 2,732 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,16 Lung Primary cancer 3,695 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A5,2 Lung Primary cancer 3,843 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,3 Lung Primary cancer 3,140 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A5,4 Lung Primary cancer 4,467 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,5 Lung Primary cancer 4,069 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,6 Lung Primary cancer 2,312 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,7 Lung Primary cancer 1,804 0.02 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,8 Lung Primary cancer 3,383 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,9 Lung Primary cancer 4,378 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,1 Lung Primary cancer 3,859 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,10 Lung Primary cancer 2,857 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,11 Lung Primary cancer 2,777 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A6,12 Lung Primary cancer 2,874 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A6,13 Lung Primary cancer 1,266 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,14 Lung Primary cancer 3,237 0.13 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A5,11 Lung Primary cancer 2,606 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,12 Lung Primary cancer 3,658 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,13 Lung Primary cancer 997 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,14 Lung Primary cancer 3,501 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A5,15 Lung Primary cancer 2,732 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,16 Lung Primary cancer 3,695 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A5,2 Lung Primary cancer 3,843 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,3 Lung Primary cancer 3,140 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A5,4 Lung Primary cancer 4,467 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,5 Lung Primary cancer 4,069 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A5,6 Lung Primary cancer 2,312 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,7 Lung Primary cancer 1,804 0.02 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,8 Lung Primary cancer 3,383 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A5,9 Lung Primary cancer 4,378 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,1 Lung Primary cancer 3,859 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,10 Lung Primary cancer 2,857 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,11 Lung Primary cancer 2,777 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A6,12 Lung Primary cancer 2,874 0.04 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A6,13 Lung Primary cancer 1,266 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,14 Lung Primary cancer 3,237 0.13 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A5,11 Lung Primary cancer 2,606 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,12 Lung Primary cancer 3,658 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,13 Lung Primary cancer 997 0.07 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,14 Lung Primary cancer 3,501 0.14 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,15 Lung Primary cancer 2,732 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,16 Lung Primary cancer 3,695 0.43 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A5,2 Lung Primary cancer 3,843 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,3 Lung Primary cancer 3,140 0.39 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A5,4 Lung Primary cancer 4,467 0.17 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,5 Lung Primary cancer 4,069 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A5,6 Lung Primary cancer 2,312 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,7 Lung Primary cancer 1,804 0.02 0.05 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A5,8 Lung Primary cancer 3,383 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A5,9 Lung Primary cancer 4,378 0.23 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,1 Lung Primary cancer 3,859 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,10 Lung Primary cancer 2,857 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,11 Lung Primary cancer 2,777 0.38 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A6,12 Lung Primary cancer 2,874 0.04 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A6,13 Lung Primary cancer 1,266 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,14 Lung Primary cancer 3,237 0.13 0.07 Homogeneous Weakly segregated