scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A6,15 Lung Primary cancer 2,670 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,16 Lung Primary cancer 4,228 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A6,2 Lung Primary cancer 3,118 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,3 Lung Primary cancer 3,025 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A6,4 Lung Primary cancer 3,920 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,5 Lung Primary cancer 2,511 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,6 Lung Primary cancer 3,549 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,7 Lung Primary cancer 2,535 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A6,8 Lung Primary cancer 3,160 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,9 Lung Primary cancer 4,165 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,1 Lung Primary cancer 4,047 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,10 Lung Primary cancer 1,970 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,11 Lung Primary cancer 4,089 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,12 Lung Primary cancer 2,309 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,13 Lung Primary cancer 3,371 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,14 Lung Primary cancer 3,875 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,15 Lung Primary cancer 3,285 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,16 Lung Primary cancer 3,385 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,2 Lung Primary cancer 4,160 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,3 Lung Primary cancer 3,125 0.16 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A6,15 Lung Primary cancer 2,670 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,16 Lung Primary cancer 4,228 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A6,2 Lung Primary cancer 3,118 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,3 Lung Primary cancer 3,025 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A6,4 Lung Primary cancer 3,920 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,5 Lung Primary cancer 2,511 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,6 Lung Primary cancer 3,549 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,7 Lung Primary cancer 2,535 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A6,8 Lung Primary cancer 3,160 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A6,9 Lung Primary cancer 4,165 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,1 Lung Primary cancer 4,047 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,10 Lung Primary cancer 1,970 0.33 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,11 Lung Primary cancer 4,089 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,12 Lung Primary cancer 2,309 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,13 Lung Primary cancer 3,371 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,14 Lung Primary cancer 3,875 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,15 Lung Primary cancer 3,285 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,16 Lung Primary cancer 3,385 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,2 Lung Primary cancer 4,160 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,3 Lung Primary cancer 3,125 0.16 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A6,15 Lung Primary cancer 2,670 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,16 Lung Primary cancer 4,228 0.39 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A6,2 Lung Primary cancer 3,118 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,3 Lung Primary cancer 3,025 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A6,4 Lung Primary cancer 3,920 0.33 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,5 Lung Primary cancer 2,511 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,6 Lung Primary cancer 3,549 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,7 Lung Primary cancer 2,535 0.06 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A6,8 Lung Primary cancer 3,160 0.17 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A6,9 Lung Primary cancer 4,165 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,1 Lung Primary cancer 4,047 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,10 Lung Primary cancer 1,970 0.33 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,11 Lung Primary cancer 4,089 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,12 Lung Primary cancer 2,309 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A7,13 Lung Primary cancer 3,371 0.37 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A7,14 Lung Primary cancer 3,875 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A7,15 Lung Primary cancer 3,285 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,16 Lung Primary cancer 3,385 0.31 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,2 Lung Primary cancer 4,160 0.22 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,3 Lung Primary cancer 3,125 0.17 0.10 Weakly structured Weakly segregated