scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A7,4 Lung Primary cancer 3,596 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,5 Lung Primary cancer 2,937 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,6 Lung Primary cancer 2,501 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,7 Lung Primary cancer 2,338 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,8 Lung Primary cancer 5,143 0.15 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,9 Lung Primary cancer 1,759 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A8,1 Lung Primary cancer 3,294 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,10 Lung Primary cancer 1,860 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,11 Lung Primary cancer 3,262 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,12 Lung Primary cancer 4,104 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,13 Lung Primary cancer 2,847 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,14 Lung Primary cancer 2,980 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,15 Lung Primary cancer 3,164 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,16 Lung Primary cancer 3,098 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,2 Lung Primary cancer 4,690 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,3 Lung Primary cancer 3,712 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A8,4 Lung Primary cancer 3,790 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A8,5 Lung Primary cancer 2,530 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,6 Lung Primary cancer 2,725 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,7 Lung Primary cancer 2,477 0.21 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A7,4 Lung Primary cancer 3,596 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A7,5 Lung Primary cancer 2,937 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,6 Lung Primary cancer 2,501 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,7 Lung Primary cancer 2,338 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,8 Lung Primary cancer 5,143 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A7,9 Lung Primary cancer 1,759 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A8,1 Lung Primary cancer 3,294 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,10 Lung Primary cancer 1,860 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,11 Lung Primary cancer 3,262 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,12 Lung Primary cancer 4,104 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,13 Lung Primary cancer 2,847 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,14 Lung Primary cancer 2,980 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,15 Lung Primary cancer 3,164 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,16 Lung Primary cancer 3,098 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,2 Lung Primary cancer 4,690 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,3 Lung Primary cancer 3,712 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A8,4 Lung Primary cancer 3,790 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_A8,5 Lung Primary cancer 2,530 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,6 Lung Primary cancer 2,725 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A8,7 Lung Primary cancer 2,477 0.21 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A7,4 Lung Primary cancer 3,596 0.43 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A7,5 Lung Primary cancer 2,937 0.30 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A7,6 Lung Primary cancer 2,501 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_A7,7 Lung Primary cancer 2,338 0.10 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A7,8 Lung Primary cancer 5,143 0.15 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A7,9 Lung Primary cancer 1,759 0.15 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_A8,1 Lung Primary cancer 3,294 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,10 Lung Primary cancer 1,860 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,11 Lung Primary cancer 3,262 0.30 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,12 Lung Primary cancer 4,104 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,13 Lung Primary cancer 2,847 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,14 Lung Primary cancer 2,980 0.24 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,15 Lung Primary cancer 3,164 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,16 Lung Primary cancer 3,098 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,2 Lung Primary cancer 4,690 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,3 Lung Primary cancer 3,712 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A8,4 Lung Primary cancer 3,790 0.41 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_A8,5 Lung Primary cancer 2,530 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,6 Lung Primary cancer 2,725 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_A8,7 Lung Primary cancer 2,477 0.21 0.14 Weakly structured Weakly segregated