scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A8,8 Lung Primary cancer 4,458 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A8,9 Lung Primary cancer 3,335 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,1 Lung Primary cancer 2,709 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,10 Lung Primary cancer 2,624 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,11 Lung Primary cancer 2,182 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,12 Lung Primary cancer 3,186 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,13 Lung Primary cancer 2,343 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,14 Lung Primary cancer 2,595 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,15 Lung Primary cancer 3,537 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,16 Lung Primary cancer 3,154 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,2 Lung Primary cancer 1,768 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,3 Lung Primary cancer 3,707 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,4 Lung Primary cancer 2,241 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,5 Lung Primary cancer 2,723 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,6 Lung Primary cancer 3,011 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,7 Lung Primary cancer 3,806 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,8 Lung Primary cancer 3,087 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,9 Lung Primary cancer 3,871 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B2,1 Lung Primary cancer 2,271 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B2,10 Lung Primary cancer 2,720 0.23 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A8,8 Lung Primary cancer 4,458 0.04 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A8,9 Lung Primary cancer 3,335 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,1 Lung Primary cancer 2,709 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,10 Lung Primary cancer 2,624 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,11 Lung Primary cancer 2,182 0.17 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,12 Lung Primary cancer 3,186 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,13 Lung Primary cancer 2,343 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,14 Lung Primary cancer 2,595 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,15 Lung Primary cancer 3,537 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,16 Lung Primary cancer 3,154 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,2 Lung Primary cancer 1,768 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,3 Lung Primary cancer 3,707 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,4 Lung Primary cancer 2,241 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,5 Lung Primary cancer 2,723 0.24 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,6 Lung Primary cancer 3,011 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,7 Lung Primary cancer 3,806 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,8 Lung Primary cancer 3,087 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B1,9 Lung Primary cancer 3,871 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B2,1 Lung Primary cancer 2,271 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B2,10 Lung Primary cancer 2,720 0.23 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_A8,8 Lung Primary cancer 4,458 0.04 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_A8,9 Lung Primary cancer 3,335 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,1 Lung Primary cancer 2,709 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,10 Lung Primary cancer 2,624 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,11 Lung Primary cancer 2,182 0.17 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,12 Lung Primary cancer 3,186 0.29 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,13 Lung Primary cancer 2,343 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,14 Lung Primary cancer 2,595 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,15 Lung Primary cancer 3,537 0.41 0.06 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B1,16 Lung Primary cancer 3,154 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B1,2 Lung Primary cancer 1,768 0.23 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,3 Lung Primary cancer 3,707 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,4 Lung Primary cancer 2,241 0.19 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,5 Lung Primary cancer 2,723 0.24 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,6 Lung Primary cancer 3,011 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,7 Lung Primary cancer 3,806 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B1,8 Lung Primary cancer 3,087 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B1,9 Lung Primary cancer 3,871 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B2,1 Lung Primary cancer 2,271 0.43 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B2,10 Lung Primary cancer 2,720 0.23 0.10 Weakly structured Weakly segregated