scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B3,15 Lung Primary cancer 2,415 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,16 Lung Primary cancer 3,316 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B3,2 Lung Primary cancer 2,787 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,3 Lung Primary cancer 4,402 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,4 Lung Primary cancer 3,240 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,5 Lung Primary cancer 2,320 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,6 Lung Primary cancer 2,341 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B3,7 Lung Primary cancer 2,958 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B3,8 Lung Primary cancer 1,690 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,9 Lung Primary cancer 4,215 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,1 Lung Primary cancer 2,984 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,10 Lung Primary cancer 3,764 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B4,11 Lung Primary cancer 1,721 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,12 Lung Primary cancer 4,167 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,13 Lung Primary cancer 3,062 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,14 Lung Primary cancer 3,356 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,15 Lung Primary cancer 3,436 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,16 Lung Primary cancer 2,780 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,2 Lung Primary cancer 4,146 0.46 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B4,3 Lung Primary cancer 4,182 0.43 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B3,15 Lung Primary cancer 2,415 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,16 Lung Primary cancer 3,316 0.15 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B3,2 Lung Primary cancer 2,787 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,3 Lung Primary cancer 4,402 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,4 Lung Primary cancer 3,240 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,5 Lung Primary cancer 2,320 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,6 Lung Primary cancer 2,341 0.45 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B3,7 Lung Primary cancer 2,958 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B3,8 Lung Primary cancer 1,690 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B3,9 Lung Primary cancer 4,215 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,1 Lung Primary cancer 2,984 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,10 Lung Primary cancer 3,764 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B4,11 Lung Primary cancer 1,721 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,12 Lung Primary cancer 4,167 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,13 Lung Primary cancer 3,062 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,14 Lung Primary cancer 3,356 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,15 Lung Primary cancer 3,436 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,16 Lung Primary cancer 2,780 0.21 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,2 Lung Primary cancer 4,146 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B4,3 Lung Primary cancer 4,182 0.43 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B3,15 Lung Primary cancer 2,415 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,16 Lung Primary cancer 3,316 0.15 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B3,2 Lung Primary cancer 2,787 0.18 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,3 Lung Primary cancer 4,402 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,4 Lung Primary cancer 3,240 0.34 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,5 Lung Primary cancer 2,320 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,6 Lung Primary cancer 2,341 0.45 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B3,7 Lung Primary cancer 2,958 0.41 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B3,8 Lung Primary cancer 1,690 0.29 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B3,9 Lung Primary cancer 4,215 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,1 Lung Primary cancer 2,984 0.35 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,10 Lung Primary cancer 3,764 0.13 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B4,11 Lung Primary cancer 1,721 0.33 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,12 Lung Primary cancer 4,167 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B4,13 Lung Primary cancer 3,062 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,14 Lung Primary cancer 3,356 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,15 Lung Primary cancer 3,436 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,16 Lung Primary cancer 2,780 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,2 Lung Primary cancer 4,146 0.46 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B4,3 Lung Primary cancer 4,182 0.43 0.11 Highly modular Weakly segregated