scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B4,4 Lung Primary cancer 3,098 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,5 Lung Primary cancer 3,134 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,6 Lung Primary cancer 3,258 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,7 Lung Primary cancer 2,936 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,8 Lung Primary cancer 2,207 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,9 Lung Primary cancer 4,363 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B5,1 Lung Primary cancer 3,150 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,10 Lung Primary cancer 2,744 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B5,11 Lung Primary cancer 3,933 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,12 Lung Primary cancer 3,431 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,13 Lung Primary cancer 2,847 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B5,14 Lung Primary cancer 2,803 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,15 Lung Primary cancer 2,393 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,16 Lung Primary cancer 982 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,2 Lung Primary cancer 3,199 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,3 Lung Primary cancer 5,335 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,4 Lung Primary cancer 3,581 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,5 Lung Primary cancer 2,928 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,6 Lung Primary cancer 1,877 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,7 Lung Primary cancer 4,289 0.01 0.10 Homogeneous Weakly segregated

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B4,4 Lung Primary cancer 3,098 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,5 Lung Primary cancer 3,134 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,6 Lung Primary cancer 3,258 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,7 Lung Primary cancer 2,936 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,8 Lung Primary cancer 2,207 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B4,9 Lung Primary cancer 4,363 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B5,1 Lung Primary cancer 3,150 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,10 Lung Primary cancer 2,744 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B5,11 Lung Primary cancer 3,933 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,12 Lung Primary cancer 3,431 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,13 Lung Primary cancer 2,847 0.06 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B5,14 Lung Primary cancer 2,803 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,15 Lung Primary cancer 2,393 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,16 Lung Primary cancer 982 0.17 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,2 Lung Primary cancer 3,199 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,3 Lung Primary cancer 5,335 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,4 Lung Primary cancer 3,581 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,5 Lung Primary cancer 2,928 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,6 Lung Primary cancer 1,877 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,7 Lung Primary cancer 4,289 0.01 0.08 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B4,4 Lung Primary cancer 3,098 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,5 Lung Primary cancer 3,134 0.30 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,6 Lung Primary cancer 3,258 0.31 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,7 Lung Primary cancer 2,936 0.26 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,8 Lung Primary cancer 2,207 0.33 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B4,9 Lung Primary cancer 4,363 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B5,1 Lung Primary cancer 3,150 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,10 Lung Primary cancer 2,744 0.38 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B5,11 Lung Primary cancer 3,933 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,12 Lung Primary cancer 3,431 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,13 Lung Primary cancer 2,847 0.06 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B5,14 Lung Primary cancer 2,803 0.23 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,15 Lung Primary cancer 2,393 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,16 Lung Primary cancer 982 0.18 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,2 Lung Primary cancer 3,199 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,3 Lung Primary cancer 5,335 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,4 Lung Primary cancer 3,581 0.19 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,5 Lung Primary cancer 2,928 0.31 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,6 Lung Primary cancer 1,877 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,7 Lung Primary cancer 4,289 0.01 0.11 Homogeneous Weakly segregated