scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B5,8 Lung Primary cancer 3,335 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,9 Lung Primary cancer 2,664 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B6,1 Lung Primary cancer 3,262 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,10 Lung Primary cancer 2,120 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,11 Lung Primary cancer 3,624 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,12 Lung Primary cancer 3,401 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,13 Lung Primary cancer 3,523 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B6,14 Lung Primary cancer 3,454 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,15 Lung Primary cancer 2,063 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,16 Lung Primary cancer 1,695 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,2 Lung Primary cancer 3,488 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,3 Lung Primary cancer 4,596 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,4 Lung Primary cancer 2,652 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,5 Lung Primary cancer 3,954 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,6 Lung Primary cancer 4,865 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,7 Lung Primary cancer 4,100 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,8 Lung Primary cancer 3,768 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,9 Lung Primary cancer 2,746 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,1 Lung Primary cancer 4,518 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,10 Lung Primary cancer 2,634 0.18 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B5,8 Lung Primary cancer 3,335 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B5,9 Lung Primary cancer 2,664 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B6,1 Lung Primary cancer 3,262 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,10 Lung Primary cancer 2,120 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,11 Lung Primary cancer 3,624 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,12 Lung Primary cancer 3,401 0.19 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,13 Lung Primary cancer 3,523 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B6,14 Lung Primary cancer 3,454 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,15 Lung Primary cancer 2,063 0.29 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,16 Lung Primary cancer 1,695 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,2 Lung Primary cancer 3,488 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,3 Lung Primary cancer 4,596 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,4 Lung Primary cancer 2,652 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,5 Lung Primary cancer 3,954 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,6 Lung Primary cancer 4,865 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,7 Lung Primary cancer 4,100 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,8 Lung Primary cancer 3,768 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,9 Lung Primary cancer 2,746 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,1 Lung Primary cancer 4,518 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,10 Lung Primary cancer 2,634 0.18 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B5,8 Lung Primary cancer 3,335 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B5,9 Lung Primary cancer 2,664 0.13 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B6,1 Lung Primary cancer 3,262 0.15 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,10 Lung Primary cancer 2,120 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,11 Lung Primary cancer 3,624 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,12 Lung Primary cancer 3,401 0.20 0.15 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B6,13 Lung Primary cancer 3,523 0.09 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B6,14 Lung Primary cancer 3,454 0.31 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,15 Lung Primary cancer 2,063 0.29 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,16 Lung Primary cancer 1,695 0.26 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,2 Lung Primary cancer 3,488 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,3 Lung Primary cancer 4,596 0.33 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,4 Lung Primary cancer 2,652 0.25 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,5 Lung Primary cancer 3,954 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,6 Lung Primary cancer 4,865 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,7 Lung Primary cancer 4,100 0.35 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B6,8 Lung Primary cancer 3,768 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B6,9 Lung Primary cancer 2,746 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,1 Lung Primary cancer 4,518 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,10 Lung Primary cancer 2,634 0.18 0.14 Weakly structured Weakly segregated