scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B7,11 Lung Primary cancer 3,445 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,12 Lung Primary cancer 3,086 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,13 Lung Primary cancer 3,340 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,14 Lung Primary cancer 3,304 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,15 Lung Primary cancer 3,348 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B7,16 Lung Primary cancer 4,387 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,2 Lung Primary cancer 3,693 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,4 Lung Primary cancer 2,773 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,5 Lung Primary cancer 2,643 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,6 Lung Primary cancer 3,110 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,7 Lung Primary cancer 2,005 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B7,8 Lung Primary cancer 4,905 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,9 Lung Primary cancer 3,277 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,1 Lung Primary cancer 2,815 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,10 Lung Primary cancer 2,469 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B8,11 Lung Primary cancer 3,376 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,12 Lung Primary cancer 2,618 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,13 Lung Primary cancer 4,894 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,14 Lung Primary cancer 3,280 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,15 Lung Primary cancer 1,770 0.13 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B7,11 Lung Primary cancer 3,445 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,12 Lung Primary cancer 3,086 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,13 Lung Primary cancer 3,340 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,14 Lung Primary cancer 3,304 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,15 Lung Primary cancer 3,348 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B7,16 Lung Primary cancer 4,387 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,2 Lung Primary cancer 3,693 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,4 Lung Primary cancer 2,773 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,5 Lung Primary cancer 2,643 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B7,6 Lung Primary cancer 3,110 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B7,7 Lung Primary cancer 2,005 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B7,8 Lung Primary cancer 4,905 0.18 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,9 Lung Primary cancer 3,277 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,1 Lung Primary cancer 2,815 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,10 Lung Primary cancer 2,469 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B8,11 Lung Primary cancer 3,376 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,12 Lung Primary cancer 2,618 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,13 Lung Primary cancer 4,894 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,14 Lung Primary cancer 3,280 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,15 Lung Primary cancer 1,770 0.13 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B7,11 Lung Primary cancer 3,445 0.38 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B7,12 Lung Primary cancer 3,086 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,13 Lung Primary cancer 3,340 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,14 Lung Primary cancer 3,304 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,15 Lung Primary cancer 3,348 0.10 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B7,16 Lung Primary cancer 4,387 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,2 Lung Primary cancer 3,693 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,4 Lung Primary cancer 2,773 0.39 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B7,5 Lung Primary cancer 2,643 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B7,6 Lung Primary cancer 3,110 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,7 Lung Primary cancer 2,005 0.08 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B7,8 Lung Primary cancer 4,905 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B7,9 Lung Primary cancer 3,277 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B8,1 Lung Primary cancer 2,815 0.29 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,10 Lung Primary cancer 2,469 0.11 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B8,11 Lung Primary cancer 3,376 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B8,12 Lung Primary cancer 2,618 0.24 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,13 Lung Primary cancer 4,894 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,14 Lung Primary cancer 3,280 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,15 Lung Primary cancer 1,770 0.13 0.12 Homogeneous Weakly segregated