scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B8,16 Lung Primary cancer 5,588 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,2 Lung Primary cancer 3,985 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,3 Lung Primary cancer 2,345 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,4 Lung Primary cancer 3,872 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,5 Lung Primary cancer 2,984 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,6 Lung Primary cancer 2,384 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,7 Lung Primary cancer 1,964 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,8 Lung Primary cancer 3,654 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_B8,9 Lung Primary cancer 3,155 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,1 Lung Primary cancer 3,623 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C1,10 Lung Primary cancer 2,519 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,11 Lung Primary cancer 2,426 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,12 Lung Primary cancer 3,951 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,13 Lung Primary cancer 2,485 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,14 Lung Primary cancer 3,643 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,15 Lung Primary cancer 2,308 0.02 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C1,3 Lung Primary cancer 3,319 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,4 Lung Primary cancer 3,132 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,5 Lung Primary cancer 4,152 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C1,6 Lung Primary cancer 2,550 0.37 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B8,16 Lung Primary cancer 5,588 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,2 Lung Primary cancer 3,985 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,3 Lung Primary cancer 2,345 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,4 Lung Primary cancer 3,872 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_B8,5 Lung Primary cancer 2,984 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,6 Lung Primary cancer 2,384 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,7 Lung Primary cancer 1,964 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_B8,8 Lung Primary cancer 3,654 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B8,9 Lung Primary cancer 3,155 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,1 Lung Primary cancer 3,623 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C1,10 Lung Primary cancer 2,519 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,11 Lung Primary cancer 2,426 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,12 Lung Primary cancer 3,951 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,13 Lung Primary cancer 2,485 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C1,14 Lung Primary cancer 3,643 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,15 Lung Primary cancer 2,308 0.02 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C1,3 Lung Primary cancer 3,319 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,4 Lung Primary cancer 3,132 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C1,5 Lung Primary cancer 4,152 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C1,6 Lung Primary cancer 2,550 0.37 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_B8,16 Lung Primary cancer 5,588 0.33 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,2 Lung Primary cancer 3,985 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,3 Lung Primary cancer 2,345 0.25 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,4 Lung Primary cancer 3,872 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_B8,5 Lung Primary cancer 2,984 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,6 Lung Primary cancer 2,384 0.28 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,7 Lung Primary cancer 1,964 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_B8,8 Lung Primary cancer 3,654 0.14 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_B8,9 Lung Primary cancer 3,155 0.34 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,1 Lung Primary cancer 3,623 0.44 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C1,10 Lung Primary cancer 2,519 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,11 Lung Primary cancer 2,426 0.27 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,12 Lung Primary cancer 3,951 0.28 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,13 Lung Primary cancer 2,485 0.37 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C1,14 Lung Primary cancer 3,643 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,15 Lung Primary cancer 2,308 0.02 0.22 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C1,3 Lung Primary cancer 3,319 0.16 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,4 Lung Primary cancer 3,132 0.20 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C1,5 Lung Primary cancer 4,152 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C1,6 Lung Primary cancer 2,550 0.37 0.12 Highly modular Weakly segregated