scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C3,11 Lung Primary cancer 3,865 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,12 Lung Primary cancer 2,295 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,13 Lung Primary cancer 1,662 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,14 Lung Primary cancer 6,749 0.03 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C3,15 Lung Primary cancer 3,492 0.01 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__176_C3,2 Lung Primary cancer 2,947 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,3 Lung Primary cancer 2,989 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,4 Lung Primary cancer 3,885 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,5 Lung Primary cancer 2,422 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,6 Lung Primary cancer 3,472 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,7 Lung Primary cancer 2,142 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,8 Lung Primary cancer 2,724 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,9 Lung Primary cancer 3,286 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,1 Lung Primary cancer 3,837 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,10 Lung Primary cancer 4,099 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,11 Lung Primary cancer 3,401 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,12 Lung Primary cancer 2,743 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,13 Lung Primary cancer 1,262 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,14 Lung Primary cancer 6,774 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,15 Lung Primary cancer 2,130 0.00 0.02 Homogeneous Weakly segregated

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C3,11 Lung Primary cancer 3,865 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,12 Lung Primary cancer 2,295 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,13 Lung Primary cancer 1,662 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,14 Lung Primary cancer 6,749 0.03 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C3,15 Lung Primary cancer 3,492 0.01 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__176_C3,2 Lung Primary cancer 2,947 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,3 Lung Primary cancer 2,989 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,4 Lung Primary cancer 3,885 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,5 Lung Primary cancer 2,422 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,6 Lung Primary cancer 3,472 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C3,7 Lung Primary cancer 2,142 0.32 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,8 Lung Primary cancer 2,724 0.11 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C3,9 Lung Primary cancer 3,286 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,1 Lung Primary cancer 3,837 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,10 Lung Primary cancer 4,099 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,11 Lung Primary cancer 3,401 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,12 Lung Primary cancer 2,743 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,13 Lung Primary cancer 1,262 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,14 Lung Primary cancer 6,774 0.03 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,15 Lung Primary cancer 2,130 0.00 0.02 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C3,11 Lung Primary cancer 3,865 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,12 Lung Primary cancer 2,295 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,13 Lung Primary cancer 1,662 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,14 Lung Primary cancer 6,749 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,15 Lung Primary cancer 3,492 0.01 -0.01 Homogeneous Neutral
NSCLC_38242124__IMC__176_C3,2 Lung Primary cancer 2,947 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,3 Lung Primary cancer 2,989 0.14 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C3,4 Lung Primary cancer 3,885 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,5 Lung Primary cancer 2,422 0.15 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,6 Lung Primary cancer 3,472 0.27 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,7 Lung Primary cancer 2,142 0.32 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C3,8 Lung Primary cancer 2,724 0.12 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C3,9 Lung Primary cancer 3,286 0.20 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,1 Lung Primary cancer 3,837 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,10 Lung Primary cancer 4,099 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C4,11 Lung Primary cancer 3,401 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,12 Lung Primary cancer 2,743 0.12 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C4,13 Lung Primary cancer 1,262 0.17 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,14 Lung Primary cancer 6,774 0.05 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C4,15 Lung Primary cancer 2,130 0.00 0.02 Homogeneous Weakly segregated