scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C4,2 Lung Primary cancer 2,784 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,3 Lung Primary cancer 2,730 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,4 Lung Primary cancer 3,340 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,5 Lung Primary cancer 2,986 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,6 Lung Primary cancer 3,182 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,7 Lung Primary cancer 2,947 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,8 Lung Primary cancer 2,593 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,9 Lung Primary cancer 3,409 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,1 Lung Primary cancer 2,876 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,10 Lung Primary cancer 2,747 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,11 Lung Primary cancer 3,664 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,12 Lung Primary cancer 2,717 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C5,13 Lung Primary cancer 452 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,14 Lung Primary cancer 6,673 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,15 Lung Primary cancer 2,221 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,2 Lung Primary cancer 2,707 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,3 Lung Primary cancer 2,650 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,4 Lung Primary cancer 2,859 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,5 Lung Primary cancer 2,731 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,6 Lung Primary cancer 2,889 0.29 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C4,2 Lung Primary cancer 2,784 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,3 Lung Primary cancer 2,730 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,4 Lung Primary cancer 3,340 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,5 Lung Primary cancer 2,986 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C4,6 Lung Primary cancer 3,182 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C4,7 Lung Primary cancer 2,947 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C4,8 Lung Primary cancer 2,593 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,9 Lung Primary cancer 3,409 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,1 Lung Primary cancer 2,876 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,10 Lung Primary cancer 2,747 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,11 Lung Primary cancer 3,664 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,12 Lung Primary cancer 2,717 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__176_C5,13 Lung Primary cancer 452 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,14 Lung Primary cancer 6,673 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,15 Lung Primary cancer 2,221 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,2 Lung Primary cancer 2,707 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,3 Lung Primary cancer 2,650 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__176_C5,4 Lung Primary cancer 2,859 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,5 Lung Primary cancer 2,731 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__176_C5,6 Lung Primary cancer 2,889 0.29 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__176_C4,2 Lung Primary cancer 2,784 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,3 Lung Primary cancer 2,730 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,4 Lung Primary cancer 3,340 0.38 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C4,5 Lung Primary cancer 2,986 0.30 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,6 Lung Primary cancer 3,182 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C4,7 Lung Primary cancer 2,947 0.36 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C4,8 Lung Primary cancer 2,593 0.16 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C4,9 Lung Primary cancer 3,409 0.15 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,1 Lung Primary cancer 2,876 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,10 Lung Primary cancer 2,747 0.19 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,11 Lung Primary cancer 3,664 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,12 Lung Primary cancer 2,717 0.40 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__176_C5,13 Lung Primary cancer 452 0.10 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,14 Lung Primary cancer 6,673 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,15 Lung Primary cancer 2,221 0.07 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,2 Lung Primary cancer 2,707 0.18 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,3 Lung Primary cancer 2,650 0.06 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__176_C5,4 Lung Primary cancer 2,859 0.21 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,5 Lung Primary cancer 2,731 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__176_C5,6 Lung Primary cancer 2,889 0.29 0.16 Weakly structured Highly compartmentalized