scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 Immune 35.9% 0.57 0.79
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 Other 31.0% 0.45 0.96
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 Other 32.6% 0.77 0.58
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 Other 77.3% 0.72 0.53
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 Tumor/Malignant 54.2% 0.96 0.16
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 Tumor/Malignant 45.1% 0.90 0.30
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 Tumor/Malignant 39.2% 0.90 0.24
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 Tumor/Malignant 58.2% 0.97 0.10
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 Tumor/Malignant 48.6% 0.94 0.21
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 Tumor/Malignant 43.6% 0.90 0.28
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 Tumor/Malignant 48.3% 0.98 0.08
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 Tumor/Malignant 85.9% 0.98 0.05
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 Stromal 31.6% 0.51 0.85
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 Tumor/Malignant 31.1% 0.50 0.98
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 Stromal 34.0% 0.88 0.30
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 Tumor/Malignant 26.8% 0.36 1.01
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 Tumor/Malignant 80.1% 0.96 0.14
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 Tumor/Malignant 54.6% 0.93 0.23
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 Stromal 81.7% 0.58 0.62
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 Tumor/Malignant 53.5% 0.98 0.13

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 Myeloid 34.1% 0.56 0.80
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 Tumor/Malignant 32.7% 0.56 0.90
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 Other 26.0% 0.81 0.54
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 Other 75.0% 0.71 0.55
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 Tumor/Malignant 53.9% 0.96 0.16
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 Tumor/Malignant 36.2% 0.94 0.20
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 Tumor/Malignant 38.7% 0.90 0.23
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 Tumor/Malignant 58.2% 0.97 0.10
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 Tumor/Malignant 40.3% 0.97 0.12
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 Tumor/Malignant 38.4% 0.72 0.65
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 Tumor/Malignant 47.6% 0.99 0.07
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 Tumor/Malignant 84.1% 0.99 0.04
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 Stromal 35.2% 0.55 0.79
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 Tumor/Malignant 29.6% 0.57 0.90
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 Tumor/Malignant 31.3% 0.94 0.18
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 Stromal 27.3% 0.32 1.10
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 Tumor/Malignant 80.1% 0.96 0.14
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 Tumor/Malignant 35.8% 0.98 0.08
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 Stromal 81.7% 0.58 0.62
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 Tumor/Malignant 46.1% 1.00 0.06

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 Granulocyte 33.8% 0.70 0.70
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 Fibroblast 30.2% 0.39 1.01
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 Other 31.8% 0.76 0.59
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 Other 75.0% 0.71 0.55
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 Tumor/Malignant cell 56.3% 0.95 0.19
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 Tumor/Malignant cell 45.1% 0.90 0.30
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 Tumor/Malignant cell 39.6% 0.90 0.24
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 Tumor/Malignant cell 58.2% 0.97 0.10
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 Tumor/Malignant cell 49.1% 0.94 0.22
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 Tumor/Malignant cell 43.4% 0.91 0.28
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 Tumor/Malignant cell 47.5% 0.99 0.07
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 Tumor/Malignant cell 84.1% 0.99 0.04
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 Fibroblast 37.9% 0.73 0.66
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 Tumor/Malignant cell 31.4% 0.46 0.96
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 Fibroblast 32.8% 0.89 0.29
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 Fibroblast 24.3% 0.42 1.01
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 Tumor/Malignant cell 80.1% 0.96 0.14
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 Tumor/Malignant cell 56.9% 0.92 0.25
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 Fibroblast 81.7% 0.58 0.62
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 Tumor/Malignant cell 58.9% 0.97 0.16