scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 0.06 0.21 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 0.10 0.01 Homogeneous Neutral
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 0.02 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 0.19 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 0.06 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 0.10 0.01 Homogeneous Neutral
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 0.02 0.22 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 0.12 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 0.19 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A6,6 Lung Primary cancer 1,858 0.12 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A6,8 Lung Primary cancer 2,364 0.18 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A6,9 Lung Primary cancer 1,209 0.27 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,1 Lung Primary cancer 88 0.06 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,10 Lung Primary cancer 2,792 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,11 Lung Primary cancer 2,468 0.35 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A7,12 Lung Primary cancer 2,857 0.35 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A7,13 Lung Primary cancer 67 0.10 0.01 Homogeneous Neutral
NSCLC_38242124__IMC__178_A7,14 Lung Primary cancer 3,606 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,16 Lung Primary cancer 841 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,17 Lung Primary cancer 3,568 0.12 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A7,18 Lung Primary cancer 836 0.02 0.22 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A7,2 Lung Primary cancer 2,842 0.15 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,3 Lung Primary cancer 2,528 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A7,4 Lung Primary cancer 2,336 0.36 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A7,6 Lung Primary cancer 938 0.10 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A7,7 Lung Primary cancer 312 0.12 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A7,8 Lung Primary cancer 3,043 0.19 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,1 Lung Primary cancer 169 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,10 Lung Primary cancer 3,860 0.19 0.07 Weakly structured Weakly segregated