scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A8,12 Lung Primary cancer 3,762 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A8,13 Lung Primary cancer 1,777 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,14 Lung Primary cancer 3,942 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,15 Lung Primary cancer 1,779 0.46 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,16 Lung Primary cancer 2,250 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,17 Lung Primary cancer 3,942 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,18 Lung Primary cancer 3,562 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,2 Lung Primary cancer 2,798 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,3 Lung Primary cancer 2,949 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,4 Lung Primary cancer 2,687 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A8,5 Lung Primary cancer 3,785 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,6 Lung Primary cancer 1,244 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,7 Lung Primary cancer 1,427 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,8 Lung Primary cancer 2,823 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,1 Lung Primary cancer 2,934 0.15 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,10 Lung Primary cancer 2,254 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,11 Lung Primary cancer 2,507 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,12 Lung Primary cancer 2,308 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B1,13 Lung Primary cancer 284 0.16 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,14 Lung Primary cancer 2,785 0.32 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A8,12 Lung Primary cancer 3,762 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_A8,13 Lung Primary cancer 1,777 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,14 Lung Primary cancer 3,942 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,15 Lung Primary cancer 1,779 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,16 Lung Primary cancer 2,250 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,17 Lung Primary cancer 3,942 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,18 Lung Primary cancer 3,562 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,2 Lung Primary cancer 2,798 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,3 Lung Primary cancer 2,949 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,4 Lung Primary cancer 2,687 0.02 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A8,5 Lung Primary cancer 3,785 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,6 Lung Primary cancer 1,244 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_A8,7 Lung Primary cancer 1,427 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_A8,8 Lung Primary cancer 2,823 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,1 Lung Primary cancer 2,934 0.15 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,10 Lung Primary cancer 2,254 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,11 Lung Primary cancer 2,507 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,12 Lung Primary cancer 2,308 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B1,13 Lung Primary cancer 284 0.16 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,14 Lung Primary cancer 2,785 0.32 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_A8,12 Lung Primary cancer 3,762 0.11 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A8,13 Lung Primary cancer 1,777 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,14 Lung Primary cancer 3,942 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,15 Lung Primary cancer 1,779 0.47 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,16 Lung Primary cancer 2,250 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,17 Lung Primary cancer 3,942 0.37 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,18 Lung Primary cancer 3,562 0.39 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,2 Lung Primary cancer 2,798 0.36 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,3 Lung Primary cancer 2,949 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,4 Lung Primary cancer 2,687 0.02 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_A8,5 Lung Primary cancer 3,785 0.44 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,6 Lung Primary cancer 1,244 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_A8,7 Lung Primary cancer 1,427 0.17 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_A8,8 Lung Primary cancer 2,823 0.18 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,1 Lung Primary cancer 2,934 0.15 0.02 Weakly structured Neutral
NSCLC_38242124__IMC__178_B1,10 Lung Primary cancer 2,254 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,11 Lung Primary cancer 2,507 0.30 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,12 Lung Primary cancer 2,308 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B1,13 Lung Primary cancer 284 0.16 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,14 Lung Primary cancer 2,785 0.32 0.12 Weakly structured Weakly segregated