scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B1,15 Lung Primary cancer 2,650 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,16 Lung Primary cancer 2,846 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,17 Lung Primary cancer 3,474 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,18 Lung Primary cancer 3,888 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B1,3 Lung Primary cancer 2,479 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,5 Lung Primary cancer 959 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,6 Lung Primary cancer 3,262 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,7 Lung Primary cancer 2,276 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,8 Lung Primary cancer 3,443 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B1,9 Lung Primary cancer 2,545 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,1 Lung Primary cancer 1,359 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,10 Lung Primary cancer 2,860 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,11 Lung Primary cancer 877 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,12 Lung Primary cancer 1,971 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,13 Lung Primary cancer 2,500 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,15 Lung Primary cancer 5,479 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,16 Lung Primary cancer 3,878 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,17 Lung Primary cancer 1,254 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,18 Lung Primary cancer 2,314 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,2 Lung Primary cancer 2,287 0.32 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B1,15 Lung Primary cancer 2,650 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,16 Lung Primary cancer 2,846 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,17 Lung Primary cancer 3,474 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,18 Lung Primary cancer 3,888 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B1,3 Lung Primary cancer 2,479 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,5 Lung Primary cancer 959 0.19 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,6 Lung Primary cancer 3,262 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,7 Lung Primary cancer 2,276 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B1,8 Lung Primary cancer 3,443 0.04 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B1,9 Lung Primary cancer 2,545 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,1 Lung Primary cancer 1,359 0.07 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,10 Lung Primary cancer 2,860 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,11 Lung Primary cancer 877 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,12 Lung Primary cancer 1,971 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,13 Lung Primary cancer 2,500 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,15 Lung Primary cancer 5,479 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,16 Lung Primary cancer 3,878 0.11 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,17 Lung Primary cancer 1,254 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,18 Lung Primary cancer 2,314 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,2 Lung Primary cancer 2,287 0.32 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B1,15 Lung Primary cancer 2,650 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,16 Lung Primary cancer 2,846 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,17 Lung Primary cancer 3,474 0.16 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,18 Lung Primary cancer 3,888 0.39 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B1,3 Lung Primary cancer 2,479 0.15 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,5 Lung Primary cancer 959 0.19 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,6 Lung Primary cancer 3,262 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,7 Lung Primary cancer 2,276 0.33 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B1,8 Lung Primary cancer 3,443 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B1,9 Lung Primary cancer 2,545 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,1 Lung Primary cancer 1,359 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,10 Lung Primary cancer 2,860 0.25 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,11 Lung Primary cancer 877 0.41 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B2,12 Lung Primary cancer 1,971 0.26 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,13 Lung Primary cancer 2,500 0.23 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,15 Lung Primary cancer 5,479 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,16 Lung Primary cancer 3,878 0.11 0.05 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,17 Lung Primary cancer 1,254 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,18 Lung Primary cancer 2,314 0.25 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,2 Lung Primary cancer 2,287 0.32 0.10 Weakly structured Weakly segregated