scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 Tumor/Malignant 39.4% 0.89 0.38
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 Other 26.8% 0.56 0.80
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 Tumor/Malignant 37.2% 0.97 0.13
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 Tumor/Malignant 29.2% 0.52 0.90
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 Other 49.3% 0.35 0.90
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 Tumor/Malignant 58.5% 1.00 0.03
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 Tumor/Malignant 61.9% 0.97 0.12
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 Other 36.9% 0.35 1.04
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 Tumor/Malignant 73.9% 0.96 0.12
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 Tumor/Malignant 42.9% 0.84 0.46
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 Tumor/Malignant 49.9% 0.55 0.81
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 Immune 30.2% 0.31 1.03
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 Other 25.0% 0.74 0.55
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 Stromal 28.2% 0.70 0.62
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 Other 24.2% 0.67 0.68
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 Tumor/Malignant 47.3% 0.93 0.23
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 Tumor/Malignant 57.9% 0.99 0.06
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 Tumor/Malignant 67.5% 0.96 0.18
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 Tumor/Malignant 27.5% 0.95 0.17
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 Tumor/Malignant 30.6% 0.94 0.20

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 Tumor/Malignant 28.9% 0.93 0.25
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 Stromal 27.6% 0.32 1.10
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 Tumor/Malignant 35.4% 0.97 0.10
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 Other 35.7% 0.36 1.01
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 Other 50.2% 0.35 1.01
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 Tumor/Malignant 52.5% 0.99 0.04
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 Tumor/Malignant 50.0% 0.97 0.11
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 Other 33.0% 0.36 1.03
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 Tumor/Malignant 59.9% 0.99 0.04
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 Tumor/Malignant 30.9% 0.53 0.77
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 Tumor/Malignant 37.6% 0.56 0.76
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 Other 25.2% 0.29 1.07
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 Other 25.0% 0.75 0.59
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 Stromal 31.2% 0.72 0.62
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 Other 21.4% 0.70 0.72
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 Tumor/Malignant 41.9% 0.95 0.18
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 Tumor/Malignant 52.2% 0.99 0.07
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 Tumor/Malignant 58.2% 0.97 0.12
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 Tumor/Malignant 27.2% 0.96 0.16
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 Tumor/Malignant 35.0% 0.91 0.26

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 Tumor/Malignant cell 41.7% 0.87 0.42
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 Other 23.9% 0.57 0.85
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 Tumor/Malignant cell 37.3% 0.97 0.13
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 Fibroblast 29.7% 0.36 1.04
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 Other 49.8% 0.32 1.10
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 Tumor/Malignant cell 65.4% 0.99 0.05
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 Tumor/Malignant cell 62.4% 0.97 0.13
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 Other 28.3% 0.58 0.88
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 Tumor/Malignant cell 73.5% 0.96 0.12
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 Fibroblast 34.6% 0.50 0.80
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 Tumor/Malignant cell 38.2% 0.81 0.55
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 Fibroblast 27.0% 0.52 0.95
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 Tumor/Malignant cell 29.0% 0.88 0.35
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 Fibroblast 38.8% 0.87 0.34
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 Fibroblast 24.8% 0.65 0.75
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 Tumor/Malignant cell 47.4% 0.92 0.24
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 Tumor/Malignant cell 57.9% 0.99 0.06
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 Tumor/Malignant cell 68.5% 0.95 0.19
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 Tumor/Malignant cell 27.9% 0.96 0.19
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 Tumor/Malignant cell 48.2% 0.88 0.32