scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 0.34 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 0.37 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B2,3 Lung Primary cancer 2,231 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,4 Lung Primary cancer 1,722 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B2,5 Lung Primary cancer 2,518 0.38 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B2,6 Lung Primary cancer 1,446 0.06 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,7 Lung Primary cancer 420 0.11 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B2,8 Lung Primary cancer 3,794 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B2,9 Lung Primary cancer 2,293 0.27 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,1 Lung Primary cancer 1,927 0.13 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B3,10 Lung Primary cancer 3,255 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,11 Lung Primary cancer 2,170 0.23 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,12 Lung Primary cancer 2,679 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B3,13 Lung Primary cancer 2,177 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,14 Lung Primary cancer 1,286 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,15 Lung Primary cancer 769 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,16 Lung Primary cancer 2,681 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,17 Lung Primary cancer 3,128 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,18 Lung Primary cancer 2,368 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B3,2 Lung Primary cancer 1,965 0.17 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,3 Lung Primary cancer 1,432 0.29 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,4 Lung Primary cancer 3,426 0.39 0.09 Highly modular Weakly segregated