scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 Other 57.0% 0.60 0.66
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 Stromal 36.6% 0.87 0.43
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 Tumor/Malignant 28.1% 0.94 0.17
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 Tumor/Malignant 91.3% 0.99 0.04
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 Tumor/Malignant 34.7% 0.91 0.37
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 Tumor/Malignant 43.6% 0.91 0.29
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 Tumor/Malignant 35.8% 0.97 0.10
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 Stromal 32.6% 0.38 0.85
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 Tumor/Malignant 31.3% 0.50 0.88
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 Tumor/Malignant 37.1% 0.94 0.17
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 Other 55.3% 0.46 0.75
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 Tumor/Malignant 32.7% 0.49 0.92
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 Stromal 39.1% 0.84 0.45
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 Tumor/Malignant 56.2% 1.00 0.02
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 Tumor/Malignant 53.5% 0.95 0.17
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 Other 50.4% 0.56 0.76
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 Tumor/Malignant 37.9% 0.89 0.30
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 Tumor/Malignant 63.0% 0.88 0.28
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 Stromal 38.8% 0.94 0.19
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 Tumor/Malignant 51.9% 0.96 0.12

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 Other 70.4% 0.55 0.69
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 Stromal 26.8% 0.92 0.32
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 Tumor/Malignant 28.6% 0.94 0.19
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 Tumor/Malignant 89.4% 0.99 0.03
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 Tumor/Malignant 31.5% 0.92 0.32
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 Tumor/Malignant 35.7% 0.95 0.24
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 Tumor/Malignant 36.4% 0.97 0.12
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 Stromal 31.2% 0.38 0.85
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 Tumor/Malignant 26.2% 0.55 0.85
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 Tumor/Malignant 37.7% 0.94 0.18
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 Other 54.4% 0.46 0.82
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 Other 23.2% 0.56 0.94
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 Stromal 27.3% 0.89 0.33
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 Tumor/Malignant 56.2% 1.00 0.02
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 Tumor/Malignant 50.6% 0.96 0.14
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 Other 50.4% 0.56 0.77
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 Tumor/Malignant 39.0% 0.89 0.32
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 Tumor/Malignant 40.1% 0.72 0.53
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 Stromal 39.2% 0.93 0.20
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 Tumor/Malignant 49.1% 0.97 0.09

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 Other 51.9% 0.63 0.66
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 Fibroblast 33.9% 0.86 0.45
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 Tumor/Malignant cell 28.5% 0.94 0.19
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 Tumor/Malignant cell 91.7% 0.99 0.04
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 Tumor/Malignant cell 36.2% 0.89 0.40
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 Tumor/Malignant cell 45.8% 0.91 0.30
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 Tumor/Malignant cell 36.7% 0.96 0.12
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 Fibroblast 32.3% 0.36 0.88
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 Tumor/Malignant cell 29.3% 0.86 0.47
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 Tumor/Malignant cell 42.8% 0.92 0.26
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 Other 54.4% 0.46 0.84
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 Other 23.4% 0.55 0.96
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 Fibroblast 38.9% 0.84 0.45
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 Tumor/Malignant cell 77.8% 1.00 0.02
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 Tumor/Malignant cell 55.3% 0.94 0.20
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 Other 50.4% 0.56 0.79
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 Tumor/Malignant cell 50.4% 0.85 0.44
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 Tumor/Malignant cell 56.6% 0.91 0.25
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 Fibroblast 37.4% 0.93 0.21
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 Tumor/Malignant cell 53.3% 0.95 0.14