scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 0.28 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 0.29 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B3,5 Lung Primary cancer 135 0.09 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B3,6 Lung Primary cancer 2,768 0.31 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,7 Lung Primary cancer 3,326 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B3,8 Lung Primary cancer 4,606 0.07 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B3,9 Lung Primary cancer 2,355 0.30 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,1 Lung Primary cancer 1,958 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,10 Lung Primary cancer 2,209 0.40 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B4,11 Lung Primary cancer 663 0.14 0.02 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B4,12 Lung Primary cancer 2,705 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,14 Lung Primary cancer 2,098 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,15 Lung Primary cancer 226 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,16 Lung Primary cancer 1,671 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,17 Lung Primary cancer 2,366 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,18 Lung Primary cancer 2,977 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,2 Lung Primary cancer 1,749 0.31 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,3 Lung Primary cancer 341 0.18 0.05 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,4 Lung Primary cancer 3,418 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,5 Lung Primary cancer 2,425 0.16 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,6 Lung Primary cancer 688 0.27 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B4,7 Lung Primary cancer 3,747 0.29 0.10 Weakly structured Weakly segregated