scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 Tumor/Malignant 53.7% 0.98 0.07
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 Immune 27.4% 0.84 0.43
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 Other 73.6% 0.98 0.08
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 Tumor/Malignant 36.3% 0.80 0.54
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 Tumor/Malignant 92.8% 0.99 0.02
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 Tumor/Malignant 43.7% 0.98 0.08
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 Tumor/Malignant 68.7% 1.00 0.03
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 Stromal 35.5% 0.89 0.29
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 Immune 62.5% 0.93 0.20
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 Tumor/Malignant 47.4% 0.93 0.26
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 Tumor/Malignant 28.3% 0.91 0.25
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 Tumor/Malignant 68.3% 0.99 0.05
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 Stromal 25.3% 0.69 0.73
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 Stromal 32.5% 0.85 0.43
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 Stromal 31.4% 0.45 0.92
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 Tumor/Malignant 66.4% 0.98 0.07
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 Immune 30.3% 0.47 0.75
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 Tumor/Malignant 57.4% 0.90 0.28
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 Immune 44.6% 0.93 0.19
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 Stromal 34.8% 0.52 0.81

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 Tumor/Malignant 46.0% 0.99 0.03
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 Tumor/Malignant 23.3% 0.87 0.44
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 Other 68.9% 0.99 0.06
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 Tumor/Malignant 50.7% 0.96 0.20
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 Tumor/Malignant 70.6% 1.00 0.01
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 Tumor/Malignant 38.4% 0.96 0.16
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 Tumor/Malignant 69.6% 0.99 0.03
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 Tumor/Malignant 24.4% 0.86 0.36
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 Myeloid 40.6% 0.99 0.08
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 Tumor/Malignant 39.9% 0.96 0.19
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 Tumor/Malignant 27.6% 0.93 0.24
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 Tumor/Malignant 68.7% 0.99 0.06
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 Stromal 24.7% 0.31 1.08
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 Stromal 33.4% 0.85 0.45
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 Stromal 22.3% 0.51 0.89
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 Tumor/Malignant 66.4% 0.98 0.07
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 Stromal 27.9% 0.83 0.46
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 Tumor/Malignant 55.6% 0.91 0.27
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 Lymphoid 26.6% 0.73 0.62
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 Stromal 29.3% 0.86 0.36

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 Tumor/Malignant cell 53.9% 0.97 0.08
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 Myeloid cell, unspecified 26.6% 0.77 0.61
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 Other 70.6% 0.98 0.06
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 Tumor/Malignant cell 60.3% 0.93 0.25
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 Tumor/Malignant cell 92.8% 0.99 0.02
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 Tumor/Malignant cell 55.7% 0.94 0.19
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 Tumor/Malignant cell 78.8% 0.97 0.09
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 Fibroblast 33.7% 0.89 0.30
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 Granulocyte 62.8% 0.93 0.20
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 Tumor/Malignant cell 44.4% 0.94 0.24
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 Tumor/Malignant cell 28.6% 0.92 0.27
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 Tumor/Malignant cell 68.0% 0.99 0.05
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 Fibroblast 26.2% 0.44 1.04
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 Fibroblast 31.3% 0.82 0.49
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 Fibroblast 32.0% 0.37 1.01
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 Tumor/Malignant cell 68.9% 0.98 0.09
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 Fibroblast 28.0% 0.75 0.61
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 Tumor/Malignant cell 60.5% 0.89 0.31
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 T cell 44.3% 0.59 0.70
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 Fibroblast 37.0% 0.80 0.53