scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 0.21 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 0.03 0.23 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 0.04 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 0.21 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B4,8 Lung Primary cancer 4,974 0.45 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B4,9 Lung Primary cancer 2,374 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,1 Lung Primary cancer 4,529 0.03 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,10 Lung Primary cancer 2,365 0.15 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,11 Lung Primary cancer 3,810 0.04 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,12 Lung Primary cancer 1,733 0.33 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,13 Lung Primary cancer 2,241 0.20 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,14 Lung Primary cancer 2,129 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B5,15 Lung Primary cancer 4,572 0.04 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,16 Lung Primary cancer 3,049 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,17 Lung Primary cancer 2,293 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,18 Lung Primary cancer 3,090 0.05 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,2 Lung Primary cancer 3,944 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,4 Lung Primary cancer 1,629 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,5 Lung Primary cancer 1,168 0.16 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B5,6 Lung Primary cancer 669 0.12 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B5,9 Lung Primary cancer 3,839 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,10 Lung Primary cancer 1,740 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B6,12 Lung Primary cancer 3,828 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,13 Lung Primary cancer 3,390 0.21 0.11 Weakly structured Weakly segregated