scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B6,14 Lung Primary cancer 3,953 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,15 Lung Primary cancer 2,326 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,17 Lung Primary cancer 1,683 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,18 Lung Primary cancer 3,185 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,2 Lung Primary cancer 3,176 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B6,3 Lung Primary cancer 2,771 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,4 Lung Primary cancer 2,586 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,5 Lung Primary cancer 3,361 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,7 Lung Primary cancer 2,274 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,8 Lung Primary cancer 685 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,9 Lung Primary cancer 2,386 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,10 Lung Primary cancer 3,110 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,11 Lung Primary cancer 2,791 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,12 Lung Primary cancer 3,185 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,13 Lung Primary cancer 553 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,14 Lung Primary cancer 2,645 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,15 Lung Primary cancer 225 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,17 Lung Primary cancer 3,390 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,18 Lung Primary cancer 2,443 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,3 Lung Primary cancer 3,786 0.20 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B6,14 Lung Primary cancer 3,953 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,15 Lung Primary cancer 2,326 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,17 Lung Primary cancer 1,683 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,18 Lung Primary cancer 3,185 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,2 Lung Primary cancer 3,176 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B6,3 Lung Primary cancer 2,771 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,4 Lung Primary cancer 2,586 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,5 Lung Primary cancer 3,361 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,7 Lung Primary cancer 2,274 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,8 Lung Primary cancer 685 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B6,9 Lung Primary cancer 2,386 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,10 Lung Primary cancer 3,110 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,11 Lung Primary cancer 2,791 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,12 Lung Primary cancer 3,185 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,13 Lung Primary cancer 553 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,14 Lung Primary cancer 2,645 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,15 Lung Primary cancer 225 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,17 Lung Primary cancer 3,390 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,18 Lung Primary cancer 2,443 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,3 Lung Primary cancer 3,786 0.20 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B6,14 Lung Primary cancer 3,953 0.32 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,15 Lung Primary cancer 2,326 0.24 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,17 Lung Primary cancer 1,683 0.27 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,18 Lung Primary cancer 3,185 0.19 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,2 Lung Primary cancer 3,176 0.14 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B6,3 Lung Primary cancer 2,771 0.33 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,4 Lung Primary cancer 2,586 0.27 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,5 Lung Primary cancer 3,361 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,7 Lung Primary cancer 2,274 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,8 Lung Primary cancer 685 0.17 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B6,9 Lung Primary cancer 2,386 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,10 Lung Primary cancer 3,110 0.08 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B7,11 Lung Primary cancer 2,791 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,12 Lung Primary cancer 3,185 0.25 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,13 Lung Primary cancer 553 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,14 Lung Primary cancer 2,645 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,15 Lung Primary cancer 225 0.24 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,17 Lung Primary cancer 3,390 0.13 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B7,18 Lung Primary cancer 2,443 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,3 Lung Primary cancer 3,786 0.21 0.09 Weakly structured Weakly segregated